cystic fibrosis case study questions

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Maggie’s Illness

Protein Structure and Function in Cystic Fibrosis

By Michaela Gazdik Stofer

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This directed case study examines the molecular basis of cystic fibrosis to emphasize the relationship between the genetic code stored in a DNA sequence and the encoded protein’s structure and function. Cystic fibrosis is caused by mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) protein that functions to help maintain salt and water balance along the surface of the lung and gastrointestinal tract. This case introduces students to “Maggie,” who has just been diagnosed with cystic fibrosis. The students must identify the mutation causing Maggie’s disease by transcribing and translating a portion of the wildtype and mutated CFTR gene. Students then compare the three-dimensional structures of the resulting proteins to better understand the effect a single amino acid mutation can have on the overall shape of a protein. Students also review the concepts of tonicity and osmosis to examine how the defective CFTR protein leads to an increase in the viscosity of mucus in cystic fibrosis patients. This case was developed for use in an introductory college-level biology course but could also be adapted for use in an upper-level cell or molecular biology course.

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• Generate a protein sequence through transcription and translation of a given DNA gene sequence.
• Explain the chemistry of amino acid side chains and their importance in protein folding.
• Describe how a mutation in a protein sequence leads to changes in the overall tertiary structure of the protein.
• Examine various levels of protein structure using Cn3D to view three-dimensional protein structures from NCBI’s Entrez Structure database.
• Relate the loss of function of the CFTR protein to the physiological causes of cystic fibrosis.

Protein structure; transcription; translation; DNA mutation; cystic fibrosis; genetic disease; protein function; protein folding; protein; CFTR; Cn3D

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EDUCATIONAL LEVEL

Undergraduate lower division, Undergraduate upper division

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TYPE/METHODS

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Materials & Media

Supplemental materials.

The following two files should be viewed with the Cn3D software to view a single domain of the CFTR and ∆F508 CFTR proteins.

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Case Study: Cystic Fibrosis - CER

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This page is a draft and is under active development. 

Part I: A​ ​Case​ ​of​ ​Cystic​ ​Fibrosis

Dr. Weyland examined a six month old infant that had been admitted to University Hospital earlier in the day. The baby's parents had brought young Zoey to the emergency room because she had been suffering from a chronic cough. In addition, they said that Zoey sometimes would "wheeze" a lot more than they thought was normal for a child with a cold. Upon arriving at the emergency room, the attending pediatrician noted that salt crystals were present on Zoey's skin and called Dr. Weyland, a pediatric pulmonologist. Dr. Weyland suspects that baby Zoey may be suffering from cystic fibrosis.

CF affects more than 30,000 kids and young adults in the United States. It disrupts the normal function of epithelial cells — cells that make up the sweat glands in the skin and that also line passageways inside the lungs, pancreas, and digestive and reproductive systems.

The inherited CF gene directs the body's epithelial cells to produce a defective form of a protein called CFTR (or cystic fibrosis transmembrane conductance regulator) found in cells that line the lungs, digestive tract, sweat glands, and genitourinary system.

When the CFTR protein is defective, epithelial cells can't regulate the way that chloride ions pass across cell membranes. This disrupts the balance of salt and water needed to maintain a normal thin coating of mucus inside the lungs and other passageways. The mucus becomes thick, sticky, and hard to move, and can result in infections from bacterial colonization.

• "Woe to that child which when kissed on the forehead tastes salty. He is bewitched and soon will die" This is an old saying from the eighteenth century and describes one of the symptoms of CF (salty skin). Why do you think babies in the modern age have a better chance of survival than babies in the 18th century?
• What symptoms lead Dr. Weyland to his initial diagnosis?
• Consider the graph of infections, which organism stays relatively constant in numbers over a lifetime. What organism is most likely affecting baby Zoey?
• What do you think is the most dangerous time period for a patient with CF? Justify your answer.

Part​ ​II:​ ​ ​CF​ ​is​ ​a​ ​disorder​ ​of​ ​the​ ​cell​ ​membrane.

Imagine a door with key and combination locks on both sides, back and front. Now imagine trying to unlock that door blind-folded. This is the challenge faced by David Gadsby, Ph.D., who for years struggled to understand the highly intricate and unusual cystic fibrosis chloride channel – a cellular doorway for salt ions that is defective in people with cystic fibrosis.

His findings, reported in a series of three recent papers in the Journal of General Physiology, detail the type and order of molecular events required to open and close the gates of the cystic fibrosis chloride channel, or as scientists call it, the cystic fibrosis transmembrane conductance regulator (CFTR).

Ultimately, the research may have medical applications, though ironically not likely for most cystic fibrosis patients. Because two-thirds of cystic fibrosis patients fail to produce the cystic fibrosis channel altogether, a cure for most is expected to result from research focused on replacing the lost channel.

5. Suggest a molecular fix for a mutated CFTR channel. How would you correct it if you had the ability to tinker with it on a molecular level?

6. Why would treatment that targets the CFTR channel not be effective for 2⁄3 of those with cystic fibrosis?

7. Sweat glands cool the body by releasing perspiration (sweat) from the lower layers of the skin onto the surface. Sodium and chloride (salt) help carry water to the skin's surface and are then reabsorbed into the body. Why does a person with cystic fibrosis have salty tasting skin?

Part​ ​III:​ ​No​ ​cell​ ​is​ ​an​ ​island

Like people, cells need to communicate and interact with their environment to survive. One way they go about this is through pores in their outer membranes, called ion channels, which provide charged ions, such as chloride or potassium, with their own personalized cellular doorways. But, ion channels are not like open doors; instead, they are more like gateways with high-security locks that are opened and closed to carefully control the passage of their respective ions.

In the case of CFTR, chloride ions travel in and out of the cell through the channel’s guarded pore as a means to control the flow of water in and out of cells. In cystic fibrosis patients, this delicate salt/water balance is disturbed, most prominently in the lungs, resulting in thick coats of mucus that eventually spur life-threatening infections. Shown below are several mutations linked to CFTR:

8. Which mutation do you think would be easiest to correct. Justify your answer. 9. Consider what you know about proteins, why does the “folding” of the protein matter?

Part​ ​IV:​ ​Open​ ​sesame

Among the numerous ion channels in cell membranes, there are two principal types: voltage-gated and ligand-gated. Voltage-gated channels are triggered to open and shut their doors by changes in the electric potential difference across the membrane. Ligand-gated channels, in contrast, require a special “key” to unlock their doors, which usually comes in the form of a small molecule.

CFTR is a ligand-gated channel, but it’s an unusual one. Its “key” is ATP, a small molecule that plays a critical role in the storage and release of energy within cells in the body. In addition to binding the ATP, the CFTR channel must snip a phosphate group – one of three “P’s” – off the ATP molecule to function. But when, where and how often this crucial event takes place has remains obscure.

10. Compare the action of the ligand-gated channel to how an enzyme works.

11. Consider the model of the membrane channel, What could go wrong to prevent the channel from opening?

12. Where is ATP generated in the cell? How might ATP production affect the symptoms of cystic fibrosis?

13. Label the image below to show how the ligand-gated channel for CFTR works. Include a summary.

Part​ ​V:​ Can​ ​a​ ​Drug​ ​Treat​ ​Zoey’s​ ​Condition?

Dr. Weyland confirmed that Zoey does have cystic fibrosis and called the parents in to talk about potential treatments. “Good news, there are two experimental drugs that have shown promise in CF patients. These drugs can help Zoey clear the mucus from his lungs. Unfortunately, the drugs do not work in all cases.” The doctor gave the parents literature about the drugs and asked them to consider signing Zoey up for trials.

The​ ​Experimental​ ​Drugs

Ivacaftor TM is a potentiator that increases CFTR channel opening time. We know from the cell culture studies that this increases chloride transport by as much as 50% from baseline and restores it closer to what we would expect to observe in wild type CFTR. Basically, the drug increases CFTR activity by unlocking the gate that allows for the normal flow of salt and fluids.

In early trials, 144 patients all of whom were age over the age of 12 were treated with 150 mg of Ivacaftor twice daily. The total length of treatment was 48 weeks. Graph A shows changes in FEV (forced expiratory volume) with individuals using the drug versus a placebo. Graph B shows concentrations of chloride in patient’s sweat.

14. What is FEV? Describe a way that a doctor could take a measurement of FEV.

15. Why do you think it was important to have placebos in both of these studies?

16. Which graph do you think provides the most compelling evidence for the effectiveness of Ivacafor? Defend your choice.

17. Take a look at the mutations that can occur in the cell membrane proteins from Part III. For which mutation do you think Ivacaftor will be most effective? Justify your answer.

18. Would you sign Zoey up for clinical trials based on the evidence? What concerns would a parent have before considering an experimental drug?

Part​ ​VI:​ ​Zoey’s​ ​Mutation

Dr. Weyland calls a week later to inform the parents that genetic tests show that Zoey chromosomes show that she has two copies of the F508del mutation. This mutation, while the most common type of CF mutation, is also one that is difficult to treat with just Ivacaftor. There are still some options for treatment.

In people with the most common CF mutation, F508del, a series of problems prevents the CFTR protein from taking its correct shape and reaching its proper place on the cell surface. The cell recognizes the protein as not normal and targets it for degradation before it makes it to the cell surface. In order to treat this problem, we need to do two things: first, an agent to get the protein to the surface, and then ivacaftor (VX-770) to open up the channel and increase chloride transport. VX-809 has been identified as a way to help with the trafficking of the protein to the cell surface. When added VX-809 is added to ivacaftor (now called Lumacaftor,) the protein gets to the surface and also increases in chloride transport by increasing channel opening time.

In early trials, experiments were done in-vitro, where studies were done on cell cultures to see if the drugs would affect the proteins made by the cell. General observations can be made from the cells, but drugs may not work on an individual’s phenotype. A new type of research uses ex-vivo experiments, where rectal organoids (mini-guts) were grown from rectal biopsies of the patient that would be treated with the drug. Ex-vivo experiments are personalized medicine, each person may have different correctors and potentiators evaluated using their own rectal organoids. The graph below shows how each drug works for 8 different patients (#1-#8)

19. Compare ex-vivo trials to in-vitro trials.

20. One the graph, label the group that represents Ivacaftor and Lumacaftor. What is the difference between these two drugs?

21. Complete a CER Chart. If the profile labeled #7 is Zoey, rank the possible drug treatments in order of their effectiveness for her mutation. This is your CLAIM. Provide EVIDENCE​ to support your claim. Provide REASONING​ that explains why this treatment would be more effective than other treatments and why what works for Zoey may not work for other patients. This is where you tie the graph above to everything you have learned in this case. Attach a page.

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Chapter 19:  Case Study: Cystic Fibrosis

Julie M. Skrzat; Carole A. Tucker

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Introduction.

• Examination: Age 2 Months
• Evaluation, Diagnosis, and Prognosis
• Intervention
• Conclusion of Care
• Examination: Age 8 Years
• Examination: Age 16 Years
• Recommended Readings
• Full Chapter
• Supplementary Content

C ystic fibrosis (CF) is an autosomal recessive condition affecting approximately 30,000 Americans and 70,000 people worldwide. According to the Cystic Fibrosis Foundation ( Cystic Fibrosis Foundation, 2019a ), approximately 1,000 new cases are diagnosed yearly in the United States, with a known incidence of 1 per 3,900 live births. The disease prevalence varies greatly by ethnicity, with the highest prevalence occurring in Western European descendants and within the Ashkenazi Jewish population.

The CF gene, located on chromosome 7, was first identified in 1989. The disease process is caused by a mutation to the gene that encodes for the CF transmembrane conductance regulator (CFTR) protein. This mutation alters the production, structure, and function of cyclic adenosine monophosphate (cAMP), a dependent transmembrane chloride channel carrier protein found in the exocrine mucus glands throughout the body. The mutated carrier protein is unable to transport chloride across the cell membrane, resulting in an electrolyte and charge imbalance. Diffusion of water across the cell membrane is thus impaired, resulting in the development of a viscous layer of mucus. The thick mucus obstructs the cell membranes, traps nearby bacteria, and incites a local inflammatory response. Subsequent bacterial colonization occurs at an early age and ultimately this repetitive infectious process leads to progressive inflammatory damage to the organs involved in individuals with CF.

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The Biology Corner

Biology Teaching Resources

Case Study: Cystic Fibrosis Mutations

This case study is a follow-up to the Cystic Fibrosis Case Study where students explore how changes in transport proteins affects the movement of ions, resulting in a build-up of chloride ions and the symptoms of the disease.

Students were introduced to the idea that different mutations can cause differences in the transport proteins, but in the first version, the origin of these mutations was not discussed.

Eventually, students get to the chapter on DNA, RNA, and protein synthesis, so it’s a good time to circle back to the CF case and explore how mutations in DNA can affect the protein made by the ribosomes.

Students should already have some background in the central dogma, but a review may be in order to remind students how to transcribe DNA to RNA and then use a codon chart to determine the sequence of amino acids. This practice worksheet on using codon charts is something they may have done in freshman biology.

CFTR Mutations

This case explore frameshift mutations, missense mutations, and nonsense mutations. Students are given a section of DNA to transcribe and compare it to mutant DNA. Students should see that changes in DNA can result in changes in the synthesized protein, though some changes are more profound than others.

The link below is a Google Doc designed for remote learning but will work for in-class lessons. An original in-class version is also available, where it doesn’t have the colored text boxes.

Shannan Muskopf

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Gene Therapy Case Study: Cystic Fibrosis

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StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2024 Jan-.

StatPearls [Internet].

Cystic fibrosis.

Elaine Yu ; Sandeep Sharma .

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Last Update: August 8, 2022 .

• Continuing Education Activity

Until relatively modern times, cystic fibrosis was poorly understood. In 1949, Lowe et al. postulated that cystic fibrosis must be caused by a genetic defect from the autosomal recessive pattern of inheritance of the disease. High levels of salt in the sweat of patients with cystic fibrosis suggested an abnormality in electrolyte transport from the sweat gland. Researchers now know that cystic fibrosis is an autosomal recessive disorder of exocrine gland function most commonly affecting persons of Northern European descent at a rate of 1:3500. It is a chronic disease that frequently leads to chronic sinopulmonary infections and pancreatic insufficiency. The most common cause of death is end-stage lung disease. This activity reviews the workup of cystic fibrosis and describes the role of health professionals working together to manage this condition.

• Review the pathophysiology of cystic fibrosis.
• Describe the presentation of cystic fibrosis.
• Summarize the treatment of cystic fibrosis.
• Outline the workup of cystic fibrosis and the role of health professionals working together to manage this condition.
• Introduction

Since ancient times, children around the world have been afflicted with cystic fibrosis that leads to shortened lifespans. In medieval Europe, these children were believed to be cursed by witches and doomed to die. The curse that became folklore pronounced, “Woe to the child who tastes salty from a kiss on the brow, for he is cursed and soon will die.” Salty skin was a sign of an impending illness without cause or cure.  Until relatively modern times, cystic fibrosis was poorly understood. In 1949, Lowe et al. postulated that cystic fibrosis must be caused by a genetic defect from the autosomal recessive pattern of inheritance of the disease. High levels of salt in the sweat of patients with cystic fibrosis suggested an abnormality in electrolyte transport from the sweat gland. Quinton postulated that sweat ducts in these patients were impermeable to chloride. Further studies led to the hypothesis that the faulty chloride channel must be situated in the apical membranes of the lung surface or glandular epithelium to explain the respiratory and systemic organ failure associated with cystic fibrosis.  Researchers now know that cystic fibrosis is an autosomal recessive disorder of exocrine gland function most commonly affecting persons of Northern European descent at a rate of 1 in 3500.  It is a chronic disease that frequently leads to chronic sinopulmonary infections and pancreatic insufficiency. The most common cause of death is end-stage lung disease. [1] [2] [3] [4]

CF is caused by a genetic mutation in a gene on chromosome 7 that codes for a protein transmembrane conductance regulator (CFTR) protein, which functions as a transmembrane cAMP-activated chloride channel. Both copies of the gene are mutated in clinical disease.

There are over 2000 different mutations in the CFTR gene that can cause disease. These mutations are divided into five classes:

• Defective protein synthesis
• Defective protein processing
• Disordered regulation
• Defective chloride conductance
• Accelerated channel turnover [5]
• Epidemiology

The most common mutation is delta F508, which is found in 70% of American white patients with CF and two-thirds of all cases worldwide. This mutation is a class 2 mutation of abnormal folding of the CFTR protein, leading to premature destruction within the Golgi apparatus. The delta F508 mutation commonly leads to exocrine pancreatic insufficiency and a higher likelihood of meconium ileus. [6]

• Pathophysiology

Class 1 dysfunction is the result of nonsense, frameshift, or splice-site mutation, which leads to premature termination of the mRNA sequence. This fails to translate the genetic information into a protein product with a subsequent total absence of CFTR protein, and approximately 2% to 5% of cystic fibrosis cases result.

Class 2 dysfunction results in abnormal post-translational processing of the CFTR protein. This step in protein processing is essential for the proper intracellular transit of the protein. As a result, CFTR is unable to be moved to the correct cellular location.

Class 3 dysfunction is characterized by diminished protein activity in response to intracellular signaling. The result is a fully formed protein channel in the cellular membrane that is non-functional.

Class 4 dysfunction is when the protein is produced and correctly localized to the cell surface. However, the rate of chloride ion flow and the duration of channel activation after stimulation is decreased from normal.

Class 5 dysfunction is the net decreased concentration of CFTR channels in the cellular membrane as a result of rapid degradation by cellular processes. It includes mutations that alter the stability of mRNA and others that alter the stability of the mature CFTR protein.

The result of all mutations is decreased secretion of chloride and consequently increased resorption of sodium into the cellular space. The increased sodium reabsorption leads to increased water resorption and manifests as thicker mucus secretions on epithelial linings and more viscous secretions from exocrine tissues. Thickened mucus secretions in nearly every organ system involved result in mucous plugging with obstruction pathologies. The most commonly affected organs include the sinuses, lungs, pancreas, biliary and hepatic systems, intestines, and sweat glands.

Sinus disease occurs when secretion viscosity increases which obstruct the sinus ostia. Additional processes often exist here. These include ciliary dysfunction, increased inflammatory mediators, and increased bacterial colonization with pathogens such as Pseudomonas aeruginosa . The result of this syndrome is impaired sinus secretion clearance. Subsequently, chronic sinusitis occurs, and secondary structural damage may occur.

Lung disease occurs as a spectrum obstruction from thickened mucous secretion. It is important to note that the lungs of a CF patient are normal in utero, at birth, and after birth. Disease results as a cascade effect following infection and the subsequent inflammatory process. Mucus plugging in the bronchioles results in an obstructive lung disease clinical picture. As a result of obstruction, an environment optimal for bacterial growth is created within the airways. Bronchiectasis and further thick purulent sputum production occur.  Part of the inflammatory reaction includes the production of the neutrophil interleukin-8 from epithelial cells, which functions as a secretagogue, increasing mucous secretion, thereby creating a positive feedback loop of mucous secretion with persistence of inflammation, infection, and structural damage. The result of this cascade is obstruction of the airways with the resulting failure of ventilation of the lung. Poorly managed pulmonary manifestations are the primary cause of death in patients with CF.

Pancreatic manifestations of CF are due in large part to obstruction of the pancreatic ductules by thickened secretions. On the passage of gastric contents into the proximal duodenum, the pancreatic exocrine glands are triggered to excrete pancreatic enzymes into the luminal space of the small intestines. However, increased viscosity of excretions and obstruction of the pancreatic ductules inhibits this process. The net pH of the secretions lessens due to decreased sodium bicarbonate composition lending to a lesser neutralization of the acidic stomach chyme. The lower pH chyme effectively degrades what pancreatic enzymes reach the intestinal lumen. As a result, intestinal chyme is not enzymatically processed in the intestines resulting in the pathognomonic greasy stools, colicky abdominal pain, and malabsorption of nutrients from foods. Specifically, fat-soluble vitamins A, D, E, and K are notably deficient.

Furthermore, autodigestion of the pancreas may occur as these enzymes target the pancreatic tissues. This results in pancreatitis. In severe, chronic cases, this can lead to endocrine pancreatic failure when the islets of Langerhans begin to be digested by trapped pancreatic enzymes. The lasting impacts of this spectrum of disease mimic type-1 diabetes mellitus.

Increased secretion viscosity does not spare the biliary and hepatic systems. The biliary ductules may be plugged with secretions. Obstructive cirrhosis and post-hepatic hyperbilirubinemia can occur. Secondary to this, esophageal varices, splenomegaly, and hypersplenism may occur as a result of increased hepatic portal vein pressures. Gallbladder disease is more likely to occur as a spectrum of this manifestation of CF, with up to 15% of those with cystic fibrosis having gallstones.

Intestinal involvement is typically seen in children with meconium ileus at birth and intestinal obstruction later in life. The cause of meconium ileus is multifactorial. Likely, it is due to increased fluid absorption as a result of the faulty CFTR channel with dehydration of the intestinal contents leading to constipation coupled with a change in luminal contents from normal secondary to pancreatic insufficiency as discussed above.  Mechanical obstruction chronically leads to inflammation and eventual scarring and stricture formation. This may lead to further intestinal obstruction by fecal impaction or intussusception later in life.

Sweat glands offer an interesting contrast to all other tissues containing CFTR channels in that the flow of chloride is reversed.  Normally, sweat glands move chloride from the extracellular space into the intracellular space. Thus, sodium and water are reabsorbed from the sweat gland tissues into the body. However, failure of the chloride channel to reabsorb chloride leads to a loss of sodium onto the skin surface and a subsequent fluid loss. This causes the pathognomonic salty skin seen with cystic fibrosis. In prolonged or warm environments or more severe cases, this may lead to hyponatremic dehydration.

In addition to acting as a chloride transport protein, other interactions of CFTR have been postulated. In the apical plasma membrane, CFTR is part of a multiprotein assembly where three of its amino acids, threonine, arginine, and leucine, act to root the protein to a region known as PDZ-type receptors. These PDZ regions have been observed to occur in multiple intracellular signaling proteins associated with the plasma membrane as well. This also roots CFTR closely to other transporters, ion channels, receptors, kinases, phosphatases, signaling molecules, and cytoskeletal elements. These interactions between CFTR and its binding proteins have been shown to be critically involved in regulating CFTR-mediated transepithelial ion transport in vitro and in vivo. It seems that these close associations may allow for CFTR to play an essential role in epithelial cells beyond as an ion channel. While not yet fully understood, modulation of CFTR in animal studies proved that inflammatory responses, maturational processing, non-chloride ion transport, and intracellular signaling are related to its function. These other interacting proteins are potential modifiers of the cystic fibrosis phenotype and may help explain the substantial differences in clinical severity between similar genotypic patients with CF. [7] [8] [9]

• History and Physical

Newborns with CF may present with meconium ileus, prolonged neonatal jaundice, or early lung infection. Infants and children with CF may present with failure to thrive and poor weight gain, anemia, undescended testicles in boys, recurrent sinopulmonary infections, and a distal intestinal obstructive syndrome with or without pancreatic insufficiency. The median age of diagnosis is 6 to 8 months; although, individuals may not exhibit clinical signs and symptoms until later.

Adults with CF often present with exacerbations of one or more symptoms. Lung manifestations of CF include chronic bronchitis, abnormal pulmonary function tests, bronchiectasis, atypical asthma, allergic bronchopulmonary aspergillosis, and colonization with Pseudomonas aeruginosa . Sinus manifestations of CF include chronic rhinosinusitis, chronic post-nasal drip, nasal polyposis, and panopacification of the paranasal sinuses. Pancreatic manifestations include pancreatic insufficiency, recurrent pancreatitis, and early-onset diabetes. Hepatobiliary manifestations include focal biliary cirrhosis, cholelithiasis, periportal fibrosis, liver cirrhosis, portal hypertension, and variceal bleeding. Musculoskeletal manifestations include kyphoscoliosis, osteopenia/osteoporosis, and arthropathy. Hematologic manifestations include iron-deficiency anemia or anemia of chronic disease leading to splenomegaly. Nephrogenic manifestations include nephrolithiasis, nephrocalcinosis, hyperoxaluria, and hypocitraturia. Dermatologic manifestations include “salty sweat,” digital clubbing, and cyanosis. Additional dermatologic conditions due to malabsorption include acrodermatitis enteropathica due to zinc deficiency and scaly dermatitis associated with fatty acid deficiency. Finally, males may be infertile due to absent vas deferens, while females have reduced fertility due to thickened cervical mucus.

In the United States, newborns are screened for CF as part of a standard newborn screening panel. Some cases of CF are discovered on prenatal ultrasound, which may demonstrate meconium peritonitis, bowel dilation, or absent gallbladder. Such findings often lead to prenatal CF carrier screening. [10] [11] [12] [13]

To diagnose CF, the following criteria must be met:

Suspicion for Cystic Fibrosis

• Sibling with cystic fibrosis
• Positive newborn screen
• Clinical symptoms consistent with CF in 1 or more organ systems
• Chronic sinopulmonary disease
• Gastrointestinal or nutritional abnormalities
• Salt loss syndromes
• Obstructive azoospermia

Evidence of CFTR Dysfunction

• Elevated sweat chloride 2 than 60 mEq/L on two occasions
• Two disease-causing CFTR mutations
• Abnormal nasal potential difference

The diagnostic pathway starts with a sweat chloride test. If normal but still symptomatic, a repeat sweat chloride test is indicated. If the test is abnormal, DNA testing is indicated. If one or less CFTR mutations are found, expanded DNA analysis is indicated. However, the finding of 2 CF-related mutations confirms the diagnosis of cystic fibrosis.

The test for immunoreactive trypsinogen (IRT), a pancreatic enzyme, increases sensitivity and specificity in screening newborns with meconium ileus for CF. IRT monitoring can be correlated with the severity of CF, and when it drops below detectable levels can indicate the need to start pancreatic enzyme replacement.

Additional diagnostics may be indicated depending on the presenting symptoms. A chest radiograph may help identify hyperinflation, bronchiectasis, abscesses, or atelectasis. Sinus radiography may demonstrate panopacification of the paranasal sinuses. Abdominal radiology may be helpful in neonates who present with meconium ileus. Bronchoalveolar lavage typically shows many neutrophils, and microbiology is commonly positive for Haemophilus influenza, Staphylococcus aureus, Pseudomonas aeruginosa, Burkholderia cepacia, Escherichia coli, or Klebsiella pneumoniae.

Pulmonary function testing is a major tool for evaluating and monitoring disease state and progression in CF. Spirometry is the commonly used pulmonary function test. It measures the volume of air exhaled during a forceful and complete exhalation after a maximal inhalation. The total exhaled volume, known as the forced vital capacity (FVC), the volume exhaled in the first second, known as the forced expiratory volume in one second (FEV1), and their ratio (FEV1/FVC) are the most critical variables reported. These values allow for interpretation of the status of the lung ventilation function. These values are compared to an expected normal for age, height, and gender to generate an expected normal value. The measured value is then calculated as a percent of normal where normal equals 100%. A normal or high FEV1 and/or a low FVC may indicate restrictive lung disease. A low FEV1 with a high FVC indicates obstructive lung disease with airway trapping. Cystic fibrosis can be expected to show air trapping patterns with low FEV1 values proportional to the severity of the disease. [14]

• Treatment / Management

Cystic fibrosis is a systemic illness that has broad implications for both quality and quantity of life when poorly controlled. Therefore, treatment should focus on optimizing function to avoid acute illness events. This should target maintaining lung function by aggressively controlling respiratory infection and clearing airways of mucus, optimizing nutritional status with pancreatic enzyme supplements and multivitamins, and finally, by managing any other health complications that may arise. This is best performed when using a team approach of specialists who are experienced in managing cystic fibrosis. [15] [16] [17] [18]

As stated previously, pulmonary disease is the most common cause of mortality in cystic fibrosis. As such, it is extremely vital to have a low threshold for diagnosis and intervention in pulmonary illness exacerbations. A pulmonary exacerbation is the worsening of lung function due to an infection. Often this is characterized by shortness of breath, fatigue, productive cough, and fever. Pulmonary function testing will worsen from baseline during an exacerbation. Any acute illness should prompt admission to a hospital facility familiar with cystic fibrosis management.

Pulmonary illness should be managed with two primary goals: treat the infection and improve oxygenation.  P. aeruginosa typically induces infectious etiologies, and antibiotic therapy should have spectrum coverage against this pathogen. However, sputum culture should be obtained and a sensitivity profile obtained for the pathogens present. CF guidelines recommend at least one antibiotic to cover each pathogenic bacteria cultured from respiratory secretions and two antibiotics for P. aeruginosa infections. Mild exacerbations may be amenable to oral antibiotics, but more severe exacerbations require intravenous medication use. Inhaled antibiotics are not recommended whenever an intravenous alternative is possible. Ventilation and oxygenation should be supported through the use of inhaled bronchodilators, including albuterol and ipratropium bromide. Agents such as inhaled dornase alfa or inhaled hypertonic saline are prescribed to promote airway secretion clearance in conjunction with chest physiotherapy. Anti-inflammatory medicines such as glucocorticoids are also used to assist in opening airways to relieve the obstruction. The work of breathing should be optimized, utilizing nasal cannula oxygen when appropriate. Bilevel positive airway pressure (BiPAP) ventilation may be necessary to overcome airway trapping. Intubation with mechanical ventilation is an option but should be avoided whenever possible and used only when respiratory failure is imminent.

Chronic, supportive therapy for patients with CF includes regular pancreatic enzymes, fat-soluble vitamins (A, D, E, K), mucolytics, bronchodilators, antibiotics, and anti-inflammatory agents.

A new class of medications known as CFTR modulator therapies is designed to correct the dysfunction by improving production, intracellular processing, or function of the CFTR protein caused by the mutated gene. Each medication is targeted at a specific dysfunction caused by a specific gene mutation. Ivacaftor is used in the treatment of class 3 dysfunctions, where a mutation at G551D is the primary aberration. It acts by binding the defective CFTR protein at the cell surface and opening the chloride channel, thus restoring the proper function of the protein. This was the first medication to directly impact the protein channel rather than treating the effects of CF.  Dosing for patients older than six years is 150 mg by mouth every 12 hours. Younger patients should receive weight-based dosing where those with less than 14 kg bodyweight receive 50 mg by mouth every 12 hours, and those with greater than 14 kg bodyweight should receive 75 mg by mouth every 12 hours. Lumacaftor is a chaperone molecule that was designed to move the defective CFTR protein from the intracellular organelles where it is processed and onto the cell surface. As such, it is effective in delta F508 homozygous mutation genotypes. Clinically, this medicine has no benefit when given alone. However, when combined as lumacaftor/ivacaftor has been shown in the 92-week PROGRESS study to have modest benefits for patients who tolerate the medicine in both pulmonary function testing and body mass index (BMI). This medicine combination was subsequently approved for use in a patient older than six years old. Dosing is two tablets containing lumacaftor 200 mg/ivacaftor 125 mg taken orally every 12 hours. Another medication combination currently in clinical trials is tezacaftor/ivacaftor. Tezacaftor, as a medicine, is very similar to lumacaftor in that it is a CFTR protein chaperone that improves the intracellular processing and trafficking of CFTR. Likewise, its clinical efficacy is only seen when placed in combination with ivacaftor. This medicine is showing a good safety profile, and preliminary EVOLVE and EXPAND trials are indicating less side effect profiles compared to lumacaftor/ivacaftor.

Despite major advancements in medical therapies for CF, the disease process continues to advance, and the lungs will ultimately fail prematurely from the disease burden without surgical intervention. Lung transplant is the treatment of choice for end-stage lung disease. The timing of the transplant is multifactorial. The International Society of Heart and Lung Transplantation published a list of conditions to be used when considering transplant referral and takes into consideration the 5-year predicted survival of less than 50%, the FEV1 that has fallen to 30% of predicted values, rapidly falling FEV1 despite optimal therapy, a 6-minute walk distance of less than 400 meters, the development of pulmonary hypertension in the absence of a hypoxemic exacerbation, clinical decline characterized by increasing frequency of exacerbations including acute respiratory failure requiring noninvasive ventilation, a pattern of poor clinical recovery from successive exacerbations, worsening nutritional status despite supplementation, pneumothorax, or life-threatening hemoptysis despite bronchial artery embolization.  Virtually all lung transplants for CF will need replacement of both lungs. This is because a native, diseased lung would act as a source of infected secretions that would threaten the transplanted lung and possibly induce respiratory failure. It is important to note that transplantation is not a cure for CF, but it confers a prolongation of life and offers significant symptomatic relief.

Diet and Exercise

Individuals with CF are encouraged to consume a high-fat diet with supplemental fat-soluble vitamins to compensate for malabsorption. Additionally, patients living with CF are encouraged to consume a high-calorie diet to maintain a healthy weight and combat chronic inflammation and frequent infections that are commonly encountered. According to the Cystic Fibrosis Foundation, women should consume 2500 to 3000 calories a day, while men should consume 3000 to 3700 calories a day. Those living in hot climates or who participate in activities that cause sweating are encouraged to consume additional sodium in their diet. Oral feedings are preferred; however, if the intake does not meet metabolic demand as determined by continued decreases in BMI, enteral (tube) feedings should be considered. These are typically in the form of gastric tube feedings or jejunal tube feedings. Multiple control studies of enteral nutrition in patients with CF have shown benefit in the form of improved, or neutral lung function following exacerbations of illness that directly correlate with BMI. With that noted, however, no randomized studies of enteral nutrition have been performed in patients with CF to date. Parenteral nutrition may be considered only when oral or enteral nutrition is not meeting metabolic needs. Parenteral nutrition has been linked to increased risk for sepsis events and should be used sparingly. Regular exercise is encouraged in patients with CF to maintain and support lung function.

• Differential Diagnosis
• Bronchiolitis
• Bronchiectasis
• Celiac disease
• Nutritional considerations in failure to thrive
• Pediatric Aspergillosis
• Primary ciliary dyskinesia

Patients with CF are estimated to live until about the fourth decade of life before requiring lung transplantation. Lung transplantation confers a median survival of 8.5 years.

• Enhancing Healthcare Team Outcomes

Cystic fibrosis is a systemic illness that has broad implications for both quality and quantity of life when poorly controlled. Therefore, treatment should focus on optimizing function to avoid acute illness events. This should target maintaining lung function by aggressively controlling respiratory infection and clearing airways of mucus, optimizing nutritional status with pancreatic enzyme supplements and multivitamins, and finally, by managing any other health complications that may arise. This is best performed when using a team approach of specialists who are experienced in managing cystic fibrosis. Specialties that may be part of the team include pulmonologists, infectious disease, and gastroenterology. Nurses monitor patients and facilitate team communication. Pharmacists review all medications, check for drug-drug interactions, and educate patients and their families about the importance of compliance and potential side effects. [Level 5] Lung infections continue to have the highest mortality rates. For children who undergo a lung transplant, survival is increased for 6-8 years, but without a lung transplant, most children are dead within a few years.

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Periapical (PA) Chest Radiograph, Cystic Fibrosis Contributed by Scott Dulebohn, MD

Disclosure: Elaine Yu declares no relevant financial relationships with ineligible companies.

Disclosure: Sandeep Sharma declares no relevant financial relationships with ineligible companies.

This book is distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International (CC BY-NC-ND 4.0) ( http://creativecommons.org/licenses/by-nc-nd/4.0/ ), which permits others to distribute the work, provided that the article is not altered or used commercially. You are not required to obtain permission to distribute this article, provided that you credit the author and journal.

• Cite this Page Yu E, Sharma S. Cystic Fibrosis. [Updated 2022 Aug 8]. In: StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2024 Jan-.

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