author's note in research paper

13.5 Research Process: Making Notes, Synthesizing Information, and Keeping a Research Log

Learning outcomes.

By the end of this section, you will be able to:

• Employ the methods and technologies commonly used for research and communication within various fields.
• Practice and apply strategies such as interpretation, synthesis, response, and critique to compose texts that integrate the writer’s ideas with those from appropriate sources.
• Analyze and make informed decisions about intellectual property based on the concepts that motivate them.
• Apply citation conventions systematically.

As you conduct research, you will work with a range of “texts” in various forms, including sources and documents from online databases as well as images, audio, and video files from the Internet. You may also work with archival materials and with transcribed and analyzed primary data. Additionally, you will be taking notes and recording quotations from secondary sources as you find materials that shape your understanding of your topic and, at the same time, provide you with facts and perspectives. You also may download articles as PDFs that you then annotate. Like many other students, you may find it challenging to keep so much material organized, accessible, and easy to work with while you write a major research paper. As it does for many of those students, a research log for your ideas and sources will help you keep track of the scope, purpose, and possibilities of any research project.

A research log is essentially a journal in which you collect information, ask questions, and monitor the results. Even if you are completing the annotated bibliography for Writing Process: Informing and Analyzing , keeping a research log is an effective organizational tool. Like Lily Tran’s research log entry, most entries have three parts: a part for notes on secondary sources, a part for connections to the thesis or main points, and a part for your own notes or questions. Record source notes by date, and allow room to add cross-references to other entries.

Summary of Assignment: Research Log

Your assignment is to create a research log similar to the student model. You will use it for the argumentative research project assigned in Writing Process: Integrating Research to record all secondary source information: your notes, complete publication data, relation to thesis, and other information as indicated in the right-hand column of the sample entry.

Another Lens. A somewhat different approach to maintaining a research log is to customize it to your needs or preferences. You can apply shading or color coding to headers, rows, and/or columns in the three-column format (for colors and shading). Or you can add columns to accommodate more information, analysis, synthesis, or commentary, formatting them as you wish. Consider adding a column for questions only or one for connections to other sources. Finally, consider a different visual format , such as one without columns. Another possibility is to record some of your comments and questions so that you have an aural rather than a written record of these.

Writing Center

At this point, or at any other point during the research and writing process, you may find that your school’s writing center can provide extensive assistance. If you are unfamiliar with the writing center, now is a good time to pay your first visit. Writing centers provide free peer tutoring for all types and phases of writing. Discussing your research with a trained writing center tutor can help you clarify, analyze, and connect ideas as well as provide feedback on works in progress.

Quick Launch: Beginning Questions

You may begin your research log with some open pages in which you freewrite, exploring answers to the following questions. Although you generally would do this at the beginning, it is a process to which you likely will return as you find more information about your topic and as your focus changes, as it may during the course of your research.

• What information have I found so far?
• What do I still need to find?
• Where am I most likely to find it?

These are beginning questions. Like Lily Tran, however, you will come across general questions or issues that a quick note or freewrite may help you resolve. The key to this section is to revisit it regularly. Written answers to these and other self-generated questions in your log clarify your tasks as you go along, helping you articulate ideas and examine supporting evidence critically. As you move further into the process, consider answering the following questions in your freewrite:

• What evidence looks as though it best supports my thesis?
• What evidence challenges my working thesis?
• How is my thesis changing from where it started?

Creating the Research Log

As you gather source material for your argumentative research paper, keep in mind that the research is intended to support original thinking. That is, you are not writing an informational report in which you simply supply facts to readers. Instead, you are writing to support a thesis that shows original thinking, and you are collecting and incorporating research into your paper to support that thinking. Therefore, a research log, whether digital or handwritten, is a great way to keep track of your thinking as well as your notes and bibliographic information.

In the model below, Lily Tran records the correct MLA bibliographic citation for the source. Then, she records a note and includes the in-text citation here to avoid having to retrieve this information later. Perhaps most important, Tran records why she noted this information—how it supports her thesis: The human race must turn to sustainable food systems that provide healthy diets with minimal environmental impact, starting now . Finally, she makes a note to herself about an additional visual to include in the final paper to reinforce the point regarding the current pressure on food systems. And she connects the information to other information she finds, thus cross-referencing and establishing a possible synthesis. Use a format similar to that in Table 13.4 to begin your own research log.

Types of Research Notes

Taking good notes will make the research process easier by enabling you to locate and remember sources and use them effectively. While some research projects requiring only a few sources may seem easily tracked, research projects requiring more than a few sources are more effectively managed when you take good bibliographic and informational notes. As you gather evidence for your argumentative research paper, follow the descriptions and the electronic model to record your notes. You can combine these with your research log, or you can use the research log for secondary sources and your own note-taking system for primary sources if a division of this kind is helpful. Either way, be sure to include all necessary information.

Bibliographic Notes

These identify the source you are using. When you locate a useful source, record the information necessary to find that source again. It is important to do this as you find each source, even before taking notes from it. If you create bibliographic notes as you go along, then you can easily arrange them in alphabetical order later to prepare the reference list required at the end of formal academic papers. If your instructor requires you to use MLA formatting for your essay, be sure to record the following information:

• Title of source
• Title of container (larger work in which source is included)
• Other contributors
• Publication date

When using MLA style with online sources, also record the following information:

• Date of original publication
• Date of access
• DOI (A DOI, or digital object identifier, is a series of digits and letters that leads to the location of an online source. Articles in journals are often assigned DOIs to ensure that the source can be located, even if the URL changes. If your source is listed with a DOI, use that instead of a URL.)

It is important to understand which documentation style your instructor will require you to use. Check the Handbook for MLA Documentation and Format and APA Documentation and Format styles . In addition, you can check the style guide information provided by the Purdue Online Writing Lab .

Informational Notes

These notes record the relevant information found in your sources. When writing your essay, you will work from these notes, so be sure they contain all the information you need from every source you intend to use. Also try to focus your notes on your research question so that their relevance is clear when you read them later. To avoid confusion, work with separate entries for each piece of information recorded. At the top of each entry, identify the source through brief bibliographic identification (author and title), and note the page numbers on which the information appears. Also helpful is to add personal notes, including ideas for possible use of the information or cross-references to other information. As noted in Writing Process: Integrating Research , you will be using a variety of formats when borrowing from sources. Below is a quick review of these formats in terms of note-taking processes. By clarifying whether you are quoting directly, paraphrasing, or summarizing during these stages, you can record information accurately and thus take steps to avoid plagiarism.

Direct Quotations, Paraphrases, and Summaries

A direct quotation is an exact duplication of the author’s words as they appear in the original source. In your notes, put quotation marks around direct quotations so that you remember these words are the author’s, not yours. One advantage of copying exact quotations is that it allows you to decide later whether to include a quotation, paraphrase, or summary. ln general, though, use direct quotations only when the author’s words are particularly lively or persuasive.

A paraphrase is a restatement of the author’s words in your own words. Paraphrase to simplify or clarify the original author’s point. In your notes, use paraphrases when you need to record details but not exact words.

A summary is a brief condensation or distillation of the main point and most important details of the original source. Write a summary in your own words, with facts and ideas accurately represented. A summary is useful when specific details in the source are unimportant or irrelevant to your research question. You may find you can summarize several paragraphs or even an entire article or chapter in just a few sentences without losing useful information. It is a good idea to note when your entry contains a summary to remind you later that it omits detailed information. See Writing Process Integrating Research for more detailed information and examples of quotations, paraphrases, and summaries and when to use them.

Other Systems for Organizing Research Logs and Digital Note-Taking

Students often become frustrated and at times overwhelmed by the quantity of materials to be managed in the research process. If this is your first time working with both primary and secondary sources, finding ways to keep all of the information in one place and well organized is essential.

Because gathering primary evidence may be a relatively new practice, this section is designed to help you navigate the process. As mentioned earlier, information gathered in fieldwork is not cataloged, organized, indexed, or shelved for your convenience. Obtaining it requires diligence, energy, and planning. Online resources can assist you with keeping a research log. Your college library may have subscriptions to tools such as Todoist or EndNote. Consult with a librarian to find out whether you have access to any of these. If not, use something like the template shown in Figure 13.8 , or another like it, as a template for creating your own research notes and organizational tool. You will need to have a record of all field research data as well as the research log for all secondary sources.

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13.1 Formatting a Research Paper

Learning objectives.

• Identify the major components of a research paper written using American Psychological Association (APA) style.
• Apply general APA style and formatting conventions in a research paper.

In this chapter, you will learn how to use APA style , the documentation and formatting style followed by the American Psychological Association, as well as MLA style , from the Modern Language Association. There are a few major formatting styles used in academic texts, including AMA, Chicago, and Turabian:

• AMA (American Medical Association) for medicine, health, and biological sciences
• APA (American Psychological Association) for education, psychology, and the social sciences
• Chicago—a common style used in everyday publications like magazines, newspapers, and books
• MLA (Modern Language Association) for English, literature, arts, and humanities
• Turabian—another common style designed for its universal application across all subjects and disciplines

While all the formatting and citation styles have their own use and applications, in this chapter we focus our attention on the two styles you are most likely to use in your academic studies: APA and MLA.

If you find that the rules of proper source documentation are difficult to keep straight, you are not alone. Writing a good research paper is, in and of itself, a major intellectual challenge. Having to follow detailed citation and formatting guidelines as well may seem like just one more task to add to an already-too-long list of requirements.

Following these guidelines, however, serves several important purposes. First, it signals to your readers that your paper should be taken seriously as a student’s contribution to a given academic or professional field; it is the literary equivalent of wearing a tailored suit to a job interview. Second, it shows that you respect other people’s work enough to give them proper credit for it. Finally, it helps your reader find additional materials if he or she wishes to learn more about your topic.

Furthermore, producing a letter-perfect APA-style paper need not be burdensome. Yes, it requires careful attention to detail. However, you can simplify the process if you keep these broad guidelines in mind:

• Work ahead whenever you can. Chapter 11 “Writing from Research: What Will I Learn?” includes tips for keeping track of your sources early in the research process, which will save time later on.
• Get it right the first time. Apply APA guidelines as you write, so you will not have much to correct during the editing stage. Again, putting in a little extra time early on can save time later.
• Use the resources available to you. In addition to the guidelines provided in this chapter, you may wish to consult the APA website at http://www.apa.org or the Purdue University Online Writing lab at http://owl.english.purdue.edu , which regularly updates its online style guidelines.

General Formatting Guidelines

This chapter provides detailed guidelines for using the citation and formatting conventions developed by the American Psychological Association, or APA. Writers in disciplines as diverse as astrophysics, biology, psychology, and education follow APA style. The major components of a paper written in APA style are listed in the following box.

These are the major components of an APA-style paper:

Body, which includes the following:

• Headings and, if necessary, subheadings to organize the content
• In-text citations of research sources
• References page

All these components must be saved in one document, not as separate documents.

The title page of your paper includes the following information:

• Title of the paper
• Author’s name
• Name of the institution with which the author is affiliated
• Header at the top of the page with the paper title (in capital letters) and the page number (If the title is lengthy, you may use a shortened form of it in the header.)

List the first three elements in the order given in the previous list, centered about one third of the way down from the top of the page. Use the headers and footers tool of your word-processing program to add the header, with the title text at the left and the page number in the upper-right corner. Your title page should look like the following example.

The next page of your paper provides an abstract , or brief summary of your findings. An abstract does not need to be provided in every paper, but an abstract should be used in papers that include a hypothesis. A good abstract is concise—about one hundred fifty to two hundred fifty words—and is written in an objective, impersonal style. Your writing voice will not be as apparent here as in the body of your paper. When writing the abstract, take a just-the-facts approach, and summarize your research question and your findings in a few sentences.

In Chapter 12 “Writing a Research Paper” , you read a paper written by a student named Jorge, who researched the effectiveness of low-carbohydrate diets. Read Jorge’s abstract. Note how it sums up the major ideas in his paper without going into excessive detail.

Write an abstract summarizing your paper. Briefly introduce the topic, state your findings, and sum up what conclusions you can draw from your research. Use the word count feature of your word-processing program to make sure your abstract does not exceed one hundred fifty words.

Depending on your field of study, you may sometimes write research papers that present extensive primary research, such as your own experiment or survey. In your abstract, summarize your research question and your findings, and briefly indicate how your study relates to prior research in the field.

Margins, Pagination, and Headings

APA style requirements also address specific formatting concerns, such as margins, pagination, and heading styles, within the body of the paper. Review the following APA guidelines.

Use these general guidelines to format the paper:

• Set the top, bottom, and side margins of your paper at 1 inch.
• Use double-spaced text throughout your paper.
• Use a standard font, such as Times New Roman or Arial, in a legible size (10- to 12-point).
• Use continuous pagination throughout the paper, including the title page and the references section. Page numbers appear flush right within your header.
• Section headings and subsection headings within the body of your paper use different types of formatting depending on the level of information you are presenting. Additional details from Jorge’s paper are provided.

Begin formatting the final draft of your paper according to APA guidelines. You may work with an existing document or set up a new document if you choose. Include the following:

• Your title page
• The abstract you created in Note 13.8 “Exercise 1”
• Correct headers and page numbers for your title page and abstract

APA style uses section headings to organize information, making it easy for the reader to follow the writer’s train of thought and to know immediately what major topics are covered. Depending on the length and complexity of the paper, its major sections may also be divided into subsections, sub-subsections, and so on. These smaller sections, in turn, use different heading styles to indicate different levels of information. In essence, you are using headings to create a hierarchy of information.

The following heading styles used in APA formatting are listed in order of greatest to least importance:

• Section headings use centered, boldface type. Headings use title case, with important words in the heading capitalized.
• Subsection headings use left-aligned, boldface type. Headings use title case.
• The third level uses left-aligned, indented, boldface type. Headings use a capital letter only for the first word, and they end in a period.
• The fourth level follows the same style used for the previous level, but the headings are boldfaced and italicized.
• The fifth level follows the same style used for the previous level, but the headings are italicized and not boldfaced.

Visually, the hierarchy of information is organized as indicated in Table 13.1 “Section Headings” .

Table 13.1 Section Headings

A college research paper may not use all the heading levels shown in Table 13.1 “Section Headings” , but you are likely to encounter them in academic journal articles that use APA style. For a brief paper, you may find that level 1 headings suffice. Longer or more complex papers may need level 2 headings or other lower-level headings to organize information clearly. Use your outline to craft your major section headings and determine whether any subtopics are substantial enough to require additional levels of headings.

Working with the document you developed in Note 13.11 “Exercise 2” , begin setting up the heading structure of the final draft of your research paper according to APA guidelines. Include your title and at least two to three major section headings, and follow the formatting guidelines provided above. If your major sections should be broken into subsections, add those headings as well. Use your outline to help you.

Because Jorge used only level 1 headings, his Exercise 3 would look like the following:

Citation Guidelines

In-text citations.

Throughout the body of your paper, include a citation whenever you quote or paraphrase material from your research sources. As you learned in Chapter 11 “Writing from Research: What Will I Learn?” , the purpose of citations is twofold: to give credit to others for their ideas and to allow your reader to follow up and learn more about the topic if desired. Your in-text citations provide basic information about your source; each source you cite will have a longer entry in the references section that provides more detailed information.

In-text citations must provide the name of the author or authors and the year the source was published. (When a given source does not list an individual author, you may provide the source title or the name of the organization that published the material instead.) When directly quoting a source, it is also required that you include the page number where the quote appears in your citation.

This information may be included within the sentence or in a parenthetical reference at the end of the sentence, as in these examples.

Epstein (2010) points out that “junk food cannot be considered addictive in the same way that we think of psychoactive drugs as addictive” (p. 137).

Here, the writer names the source author when introducing the quote and provides the publication date in parentheses after the author’s name. The page number appears in parentheses after the closing quotation marks and before the period that ends the sentence.

Addiction researchers caution that “junk food cannot be considered addictive in the same way that we think of psychoactive drugs as addictive” (Epstein, 2010, p. 137).

Here, the writer provides a parenthetical citation at the end of the sentence that includes the author’s name, the year of publication, and the page number separated by commas. Again, the parenthetical citation is placed after the closing quotation marks and before the period at the end of the sentence.

As noted in the book Junk Food, Junk Science (Epstein, 2010, p. 137), “junk food cannot be considered addictive in the same way that we think of psychoactive drugs as addictive.”

Here, the writer chose to mention the source title in the sentence (an optional piece of information to include) and followed the title with a parenthetical citation. Note that the parenthetical citation is placed before the comma that signals the end of the introductory phrase.

David Epstein’s book Junk Food, Junk Science (2010) pointed out that “junk food cannot be considered addictive in the same way that we think of psychoactive drugs as addictive” (p. 137).

Another variation is to introduce the author and the source title in your sentence and include the publication date and page number in parentheses within the sentence or at the end of the sentence. As long as you have included the essential information, you can choose the option that works best for that particular sentence and source.

Citing a book with a single author is usually a straightforward task. Of course, your research may require that you cite many other types of sources, such as books or articles with more than one author or sources with no individual author listed. You may also need to cite sources available in both print and online and nonprint sources, such as websites and personal interviews. Chapter 13 “APA and MLA Documentation and Formatting” , Section 13.2 “Citing and Referencing Techniques” and Section 13.3 “Creating a References Section” provide extensive guidelines for citing a variety of source types.

Writing at Work

APA is just one of several different styles with its own guidelines for documentation, formatting, and language usage. Depending on your field of interest, you may be exposed to additional styles, such as the following:

• MLA style. Determined by the Modern Languages Association and used for papers in literature, languages, and other disciplines in the humanities.
• Chicago style. Outlined in the Chicago Manual of Style and sometimes used for papers in the humanities and the sciences; many professional organizations use this style for publications as well.
• Associated Press (AP) style. Used by professional journalists.

References List

The brief citations included in the body of your paper correspond to the more detailed citations provided at the end of the paper in the references section. In-text citations provide basic information—the author’s name, the publication date, and the page number if necessary—while the references section provides more extensive bibliographical information. Again, this information allows your reader to follow up on the sources you cited and do additional reading about the topic if desired.

The specific format of entries in the list of references varies slightly for different source types, but the entries generally include the following information:

• The name(s) of the author(s) or institution that wrote the source
• The year of publication and, where applicable, the exact date of publication
• The full title of the source
• For books, the city of publication
• For articles or essays, the name of the periodical or book in which the article or essay appears
• For magazine and journal articles, the volume number, issue number, and pages where the article appears
• For sources on the web, the URL where the source is located

The references page is double spaced and lists entries in alphabetical order by the author’s last name. If an entry continues for more than one line, the second line and each subsequent line are indented five spaces. Review the following example. ( Chapter 13 “APA and MLA Documentation and Formatting” , Section 13.3 “Creating a References Section” provides extensive guidelines for formatting reference entries for different types of sources.)

In APA style, book and article titles are formatted in sentence case, not title case. Sentence case means that only the first word is capitalized, along with any proper nouns.

Key Takeaways

• Following proper citation and formatting guidelines helps writers ensure that their work will be taken seriously, give proper credit to other authors for their work, and provide valuable information to readers.
• Working ahead and taking care to cite sources correctly the first time are ways writers can save time during the editing stage of writing a research paper.
• APA papers usually include an abstract that concisely summarizes the paper.
• APA papers use a specific headings structure to provide a clear hierarchy of information.
• In APA papers, in-text citations usually include the name(s) of the author(s) and the year of publication.
• In-text citations correspond to entries in the references section, which provide detailed bibliographical information about a source.

Writing for Success Copyright © 2015 by University of Minnesota is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International License , except where otherwise noted.

Tutorial Thursday: Adding an Author Note in APA Style CENTRAL

For today’s edition of Tutorial Thursday, we’d like to highlight a video on our APA Style CENTRAL YouTube channel:  APA Style CENTRAL: Adding an Author Note .

https://www.youtube.com/watch?v=4-awGc022ck

This brief video (2 min) demonstrates how to add an Author Note to your paper in APA Style CENTRAL, and includes:

• The distinction between the options of “Student assignment” or “Professional manuscript” when starting a new paper;
• Using the Customize Paper Sections tool to add an Author Note section to a student paper; and
• Viewing the formatted Author Note on the manuscript’s title page via the Preview tab.

Please feel free to link to this tutorial in any location where students, faculty, and researchers will find it!

Want to learn more? View our related resources:

• APA Style CENTRAL Handouts and Guides
• A recorded session of our Writing Papers in APA Style CENTRAL webinar  (28 min)
• Training schedule for APA Style CENTRAL Webinars

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Essential Guide to Manuscript Writing for Academic Dummies: An Editor's Perspective

Syed sameer aga.

1 Department of Basic Medical Sciences, Quality Assurance Unit, College of Medicine, King Saud bin Abdulaziz University for Health Sciences (KSAU-HS), King Abdullah International Medical Research Center (KAIMRC), Ministry of National Guard Health Affairs (MNGHA), King Abdulaziz Medical City, Jeddah 21423, Saudi Arabia

2 Molecular Diseases & Diagnostics Division, Infinity Biochemistry Pvt. Ltd, Sajad Abad, Chattabal, Srinagar, Kashmir 190010, India

Saniya Nissar

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No data were used in this review.

Writing an effective manuscript is one of the pivotal steps in the successful closure of the research project, and getting it published in a peer-reviewed and indexed journal adds to the academic profile of a researcher. Writing and publishing a scientific paper is a tough task that researchers and academicians must endure in staying relevant in the field. Success in translating the benchworks into the scientific content, which is effectively communicated within the scientific field, is used in evaluating the researcher in the current academic world. Writing is a highly time-consuming and skill-oriented process that requires familiarity with the numerous publishing steps, formatting rules, and ethical guidelines currently in vogue in the publishing industry. In this review, we have attempted to include the essential information that novice authors in their early careers need to possess, to be able to write a decent first scientific manuscript ready for submission in the journal of choice. This review is unique in providing essential guidance in a simple point-wise manner in conjunction with easy-to-understand illustrations to familiarize novice researchers with the anatomy of a basic scientific manuscript.

1. Background

Communication is the pivotal key to the growth of scientific literature. Successfully written scientific communication in the form of any type of paper is needed by researchers and academicians alike for various reasons such as receiving degrees, getting a promotion, becoming experts in the field, and having editorships [ 1 , 2 ].

Here, in this review, we present the organization and anatomy of a scientific manuscript enlisting the essential features that authors should keep in their mind while writing a manuscript.

2. Types of Manuscripts

Numerous types of manuscripts do exist, which can be written by the authors for a possible publication ( Figure 1 ). Primarily, the choice is dependent upon the sort of communication authors want to make. The simplest among the scientific manuscripts is the “Letter to an Editor,” while “Systematic Review” is complex in its content and context [ 3 ].

Types of manuscripts based on complexity of content and context.

3. Anatomy of the Manuscript

Writing and publishing an effective and well-communicative scientific manuscript is arguably one of the most daunting yet important tasks of any successful research project. It is only through publishing the data that an author gets the recognition of the work, gets established as an expert, and becomes citable in the scientific field [ 4 ]. Among the numerous types of scientific manuscripts which an author can write ( Figure 1 ), original research remains central to most publications [ 4 – 10 ].

A good scientific paper essentially covers the important criteria, which define its worth such as structure, logical flow of information, content, context, and conclusion [ 5 ]. Among various guidelines that are available for the authors to follow, IMRAD scheme is the most important in determining the correct flow of content and structure of an original research paper [ 4 , 11 – 13 ]. IMRAD stands for introduction, methods, results, and discussion ( Figure 2 ). Besides these, other parts of the manuscript are equally essential such as title, abstract, keywords, and conclusion ( Figure 3 ).

Generalized anatomy of manuscript based on IMRAD format.

Three important contents of the title page—title, abstract, and keywords.

IMRAD scheme was introduced in the early 1900 by publishers to standardize the single format of the scientific manuscript and since then is the universal format used by most the publishing houses [ 6 , 14 – 17 ]. In the next sections, the contents and criteria of each of them are explained in detail. A list of the most common mistakes, which the author makes in these sections, is also provided in the tabulated form [ 18 ] ( Table 1 ).

Common mistakes authors make in their manuscripts.

• The title is the most important element of the paper, the first thing readers encounter while searching for a suitable paper [ 1 ]. It reflects the manuscript's main contribution and hence should be simple, appealing, and easy to remember [ 7 ].
• A good title should not be more than 15 words or 100 characters. Sometimes journals ask for a short running title, which should essentially be no more than 50% of the full title. Running titles need to be simple, catchy, and easy to remember [ 19 , 20 ].
• Keeping the titles extremely long can be cumbersome and is suggestive of the authors' lack of grasp of the true nature of the research done.
• It usually should be based on the keywords, which feature within the main rationale and/or objectives of the paper. The authors should construct an effective title from keywords existing in all sections of the main text of the manuscript [ 19 ].
• Having effective keywords within the title helps in the easy discovery of the paper in the search engines, databases, and indexing services, which ultimately is also reflected by the higher citations they attract [ 1 ].
• It is always better for the title to reflect the study's design or outcome [ 21 ]; thus, it is better for the authors to think of a number of different titles proactively and to choose the one, which reflects the manuscript in all domains, after careful deliberation. The paper's title should be among the last things to be decided before the submission of the paper for publication [ 20 ].
• Use of abbreviations, jargons, and redundancies such as “a study in,” “case report of,” “Investigations of,” and passive voice should be avoided in the title.

5. Abstract

• The abstract should essentially be written to answer the three main questions—“What is new in this study?” “What does it add to the current literature?” and “What are the future perspectives?”
• A well-written abstract is a pivotal part of every manuscript. For most readers, an abstract is the only part of the paper that is widely read, so it should be aimed to convey the entire message of the paper effectively [ 1 ].

Two major types of abstract—structured and unstructured. Structured abstracts are piecemealed into five different things, each consisting of one or two sentences, while unstructured abstracts consist of single paragraph written about the same things.

• An effective abstract is a rationalized summary of the whole study and essentially should contain well-balanced information about six things: background, aim, methods, results, discussion, and conclusion [ 6 , 19 ].

Three C concept followed while writing the manuscript.

• An abstract should be written at the end, after finishing the writing of an entire manuscript to be able to stand-alone from the main text. It should reflect your study completely without any reference to the main paper [ 19 ].
• The authors need to limit/write their statements in each section to two or three sentences. However, it is better to focus on results and conclusions, as they are the main parts that interest the readers and should include key results and conclusions made thereof.
• Inclusion of excessive background information, citations, abbreviations, use of acronyms, lack of rationale/aim of the study, lack of meaningful data, and overstated conclusions make an abstract ineffective.

6. Keywords

• Keywords are the important words, which feature repeatedly in the study or else cover the main theme/idea/subject of the manuscript. They are used by indexing databases such as PubMed, Scopus, and Embase in categorizing and cross-indexing the published article.
• It is always wise to enlist those words which help the paper to be easily searchable in the databases.
• Keywords can be of two types: (a) general ones that are provided by the journal or indexing services called as medical subject headings (MeSH) as available in NCBI ( https://www.ncbi.nlm.gov/mesh/ ) and (b) custom ones made by authors themselves based on the subject matter of the study [ 6 , 20 ].
• Upon submission, journals do usually ask for the provision of five to ten keywords either to categorize the paper into the subject areas or to assign it to the subspecialty for its quick processing.

7. Introduction

• (i) The whole idea of writing this section is to cover two important questions—“What are the gaps present in the current literature?” and “Why is the current study important?”
• (ii) Introduction provides an opportunity for the authors to highlight their area of study and provide rationale and justification as to why they are doing it [ 20 , 22 , 23 ].
• (iii) An effective introduction usually constitutes about 10–15% of the paper's word count [ 22 ].
• The first paragraph of the introduction should always cover “What is known about the area of study?” or “What present/current literature is telling about the problem?” All relevant and current literature/studies, i.e., original studies, meta-analyses, and systematic reviews, should be covered in this paragraph.
• The second paragraph should cover “What is unknown or not done about this issue/study area?” The authors need to indicate the aspects of what has not been answered about the broader area of the study until now.
• The third paragraph should identify the gaps in the current literature and answer “What gaps in the literature would be filled by their current study?” This part essentially identifies the shortcoming of the existing studies.
• The fourth paragraph should be dedicated to effectively writing “What authors are going to do to fill the gaps?” and “Why do they want to do it?” This paragraph contains two sections—one explains the rationale of the study and introduces the hypothesis of the study in form of questions “What did authors do? and Why they did do so?” and the second enlists specific objectives that the authors are going to explore in this study to answer “Why this study is going to be important?” or “What is the purpose of this study?”.

Funnel-down scheme followed while writing the introduction section of manuscript, moving from broader to specific information.

• (v) Introduction is regarded as the start of the storyline of manuscript, and hence, the three Cs' scheme ( Figure 5 ) becomes more relevant while writing it: the context in terms of what has been published on the current idea/problem around the world, content as to what you are going to do about the problem in hand (rationale), and conclusion as to how it is going to be done (specific objective of the study) [ 1 , 23 ].
• (vi) Introduction is the first section of the main manuscript, which talks about the story; therefore, while writing it authors should always try to think that “would this introduction be able to convince my readers?” [ 25 ]. To emphasize on the importance of the study in filling the knowledge gap is pivotal in driving the message through [ 23 ].
• (vii) Introduction should never be written like a review, any details, contexts, and comparisons should be dealt within the discussion part [ 16 ].
• (viii) While choosing the papers, it is wise to include the essential and recent studies only. Studies more than 10 years old should be avoided, as editors are inclined towards the recent and relevant ones only [ 20 , 22 ].
• (ix) In the last paragraph, enlisting the objectives has a good impact on readers. A clear distinction between the primary and secondary objectives of the study should be made while closing the introduction [ 22 ].
• (i) It is regarded as the skeleton of the manuscript as it contains information about the research done. An effective methods section should provide information about two essential aspects of the research—(a) precise description of how experiments were done and (b) rationale for choosing the specific experiments.
• Study Settings: describing the area or setting where the study was conducted. This description should cover the details relevant to the study topic.

Different guidelines available for perusal of the authors for writing an effective manuscript.

• Sample Size and Sampling Technique: mentioning what number of samples is needed and how they would be collected.
• Ethical Approvals: clearly identifying the study approval body or board and proper collection of informed consent from participants.
• Recruitment Methods: using at least three criteria for the inclusion or exclusion of the study subjects to reach an agreed sample size.
• Experimental and Intervention Details: exhaustively describing each and every detail of all the experiments and intervention carried out in the study for the readers to reproduce independently.
• Statistical Analysis: mentioning all statistical analysis carried out with the data which include all descriptive and inferential statistics and providing the analysis in meaningful statistical values such as mean, median, percent, standard deviation (SD), probability value (p), odds ratio (OR), and confidence interval (CI).

Methods and the seven areas which it should exhaustively describe.

• (iii) Methods should be elaborative enough that the readers are able to replicate the study on their own. If, however, the protocols are frequently used ones and are already available in the literature, the authors can cite them without providing any exhaustive details [ 26 ].
• (iv) Methods should be able to answer the three questions for which audience reads the paper—(1) What was done? (2) Where it was done? and (3) How it was done? [ 11 ].
• (v) Remember, methods section is all about “HOW” the data were collected contrary to “WHAT” data were collected, which should be written in the results section. Therefore, care should be taken in providing the description of the tools and techniques used for this purpose.
• (vi) Writing of the methods section should essentially follow the guidelines as per the study design right from the ideation of the project. There are numerous guidelines available, which author's must make use of, to streamline the writing of the methods section in particular (see Table xx for details).
• (vii) Provision of the information of the equipment, chemicals, reagents, and physical conditions is also vital for the readers for replication of the study. If any software is used for data analysis, it is imperative to mention it. All manufacturer's names, their city, and country should also be provided [ 6 , 11 ].
• The purpose of the results section of the manuscript is to present the finding of the study in clear, concise, and objective manner to the readers [ 7 , 27 , 28 ].
• Results section makes the heart of the manuscript, as all sections revolve around it. The reported findings should be in concordance with the objectives of the study and be able to answer the questions raised in the introduction [ 6 , 20 , 27 ].
• Results should be written in past tense without any interpretation [ 6 , 27 ].

Interdependence between methods and results of the manuscript.

• It is always better to take refuge in tables and figures to drive the exhaustive data through. Repetition of the data already carried in tables, figures, etc., should be avoided [ 4 , 6 , 20 ].
• Proper positioning and citations of the tables and figures within the main text are also critical for the flow of information and quality of the manuscript [ 6 , 11 ].
• Results section should carry clear descriptive and inferential statistics in tables and/or figures, for ease of reference to readers.
• Provision of the demographic data of the study participants takes priority in the results section; therefore, it should be made as its first paragraph. The subsequent paragraphs should introduce the inferential analysis of the data based on the rationale and objectives of the study. The last paragraphs mention what new results the study is going to offer [ 6 , 11 , 20 ].
• authors should not attempt to report all analysis of the data. Discussing, interpreting, or contextualizing the results should be avoided [ 20 ].

10. Discussion

• (i) The main purpose of writing a discussion is to fill the gap that was identified in the introduction of the manuscript and provide true interpretations of the results [ 6 , 11 , 20 ].

Pyramid scheme followed while writing the discussion section of manuscript, moving from the key results of the study to the specific conclusions.

• (iii) Discussion section toggles between two things—content and context. The authors need to exhaustively describe their interpretation of the analyzed data (content) and then compare it with the available relevant literature (context) [ 1 , 29 ]. Finally, it should justify everything in conclusion as to what all this means for the field of study.
• (iv) The comparison can either be concordant or discordant, but it needs to highlight the uniqueness and importance of the study in the field. Care should be taken not to cover up any deviant results, which do not gel with the current literature [ 30 ].
• (v) In discussion it is safe to use words such as “may,” “might,” “show,” “demonstrate,” “suggest,” and “report” while impressing upon your study's data and analyzed results.
• (vi) Putting results in context helps in identifying the strengths and weakness of the study and enables readers to get answers to two important questions—one “what are the implications of the study?” Second “how the study advance the field further?” [ 1 , 30 ].
• The first paragraph of the discussion is reserved for highlighting the key results of the study as briefly as possible [ 4 , 6 ]. However, care should be taken not to have any redundancy with the results section. The authors should utilize this part to emphasize the originality and significance of their results in the field [ 1 , 4 , 11 , 20 ].
• The second paragraph should deal with the importance of your study in relationship with other studies available in the literature [ 4 ].
• Subsequent paragraphs should focus on the context, by describing the findings in comparison with other similar studies in the field and how the gap in the knowledge has been filled [ 1 , 4 ].
• In the penultimate paragraph, authors need to highlight the strengths and limitations of the study [ 4 , 6 , 30 ].
• Final paragraph of the discussion is usually reserved for drawing the generalized conclusions for the readers to get a single take-home message.
• (viii) A well-balanced discussion is the one that effectively addresses the contribution made by this study towards the advancement of knowledge in general and the field of research in particular [ 7 ]. It essentially should carry enough information that the audience knows how to apply the new interpretation presented within that field.

11. Conclusion

• It usually makes the last part of the manuscript, if not already covered within the discussion part [ 6 , 20 ].
• Being the last part of the main text, it has a long-lasting impact on the reader and hence should be very clear in presenting the chief findings of the paper as per the rationale and objectives of the study [ 4 , 20 ].

Crux of the conclusion section.

12. References or Bibliography

• Every article needs a suitable and relevant citation of the available literature to carry the contextual message of their results to the readers [ 31 ].
• Inclusion of proper references in the required format, as asked by the target journal, is necessary.

A Google Scholar screenshot of different styles of formatting of references.

• Depending upon the journal and publishing house, usually, 30–50 citations are allowed in an original study, and they need to be relevant and recent.

13. Organization of the Manuscript Package

Ideally, all manuscripts, no matter where they have to be submitted, should follow an approved organization, which is universally used by all publication houses. “Ready to submit” manuscript package should include the following elements:

• (i) Cover letter, addressed to the chief editor of the target journal.
• (ii) Authorship file, containing the list of authors, their affiliations, emails, and ORCIDs.
• (iii) Title page, containing three things—title, abstract, and keywords.
• Main text structured upon IMRAD scheme.
• References as per required format.
• Legends to all tables and figures.
• Miscellaneous things such as author contributions, acknowledgments, conflicts of interest, funding body, and ethical approvals.
• (v) Tables as a separate file in excel format.
• (vi) Figures or illustrations, each as a separate file in JPEG or TIFF format [ 32 ].
• (vii) Reviewers file, containing names of the suggested peer reviewers working or publishing in the same field.
• (viii) Supplementary files, which can be raw data files, ethical clearance from Institutional Review Board (IRBs), appendixes, etc.

14. Overview of an Editorial Process

Each scientific journal has a specific publication policies and procedures, which govern the numerous steps of the publication process. In general, all publication houses process the submission of manuscripts via multiple steps tightly controlled by the editors and reviewers [ 33 ]. Figure 12 provides general overview of the six-step editorial process of the scientific journal.

An overview of the journal's editorial process.

15. Summary

The basic criteria for writing any scientific communication are to know how to communicate the information effectively. In this review, we have provided the critical information of do's and don'ts for the naive authors to follow in making their manuscript enough impeccable and error-free that on submission manuscript is not desk rejected at all. but this goes with mentioning that like any other skill, and the writing is also honed by practicing and is always reflective of the knowledge the writer possesses. Additionally, an effective manuscript is always based on the study design and the statistical analysis done. The authors should always bear in mind that editors apart from looking into the novelty of the study also look at how much pain authors have taken in writing, following guidelines, and formatting the manuscript. Therefore, the organization of the manuscript as per provided guidelines such as IMRAD, CONSORT, and PRISMA should be followed in letter and spirit. Care should be taken to avoid the mistakes, already enlisted, which can be the cause of desk rejection. As a general rule, before submission of the manuscript to the journal, sanitation check involving at least two reviews by colleagues should be carried out to ensure all general formatting guidelines are followed.

Acknowledgments

The authors would like to thank all academicians and researchers who have actively participated in the “Writing Manuscript Workshops” at the College of Medicine, KSAU-HS, Jeddah, which prompted them to write this review.

Data Availability

Conflicts of interest.

The authors declare no conflicts of interest.

Authors' Contributions

Both authors have critically reviewed and approved the final draft and are responsible for the content and similarity index of the manuscript. SSA conceptualized the study, designed the study, surveyed the existing literature, and wrote the manuscript. SN edited, revised, and proofread the final manuscript.

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• Published: 03 September 2021

What makes an author

Nature Methods volume  18 ,  page 983 ( 2021 ) Cite this article

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• Research management

Constructing a fair and accurate author list can be one of the most fraught aspects of manuscript publication. We provide some advice and resources for authors at all career levels.

The acknowledgement of scientific contributions in the form of manuscript authorship is vital at all stages of a researcher’s career, from the well-established principal investigator applying for million-dollar grants to the undergraduate student applying to PhD programs. It’s essential that authorship lists are constructed with utmost care.

The variety of authorship practices across the scientific literature, however, is vast. Different fields, different countries, even different labs have different norms. Some practices are troubling: lab technicians not included for their major contributions to a study because they are not on an academic track; contributors removed from author lists due to personal disputes; researchers who have not substantially contributed added to papers (in a misguided attempt to increase ‘impact’) without their consent; senior scientists taking advantage of power imbalance to undeservedly gain publications.

Even researchers with the best intentions can struggle with finalizing a fair and accurate author list. Here, we provide some best practice guidelines and explain how Nature Methods handles authorship issues.

First of all, community guidelines for authorship are available. Nature Portfolio’s authorship policies are based on guidelines developed by McNutt et al. ( Proc. Natl Acad. Sci. USA 115 , 2557–2560, 2018). Other guidelines in common use include those from the International Committee of Medical Journal Editors . As defined by Nature Portfolio, an author listed on a paper should have made a substantial contribution to the design of the work, the collection or analysis of data, the creation of a software tool, or the writing of the paper. This policy is meant to be broad and flexible, leaving “substantial contribution” up for quite a bit of room for interpretation.

In our view, job title or rank should never exclude a potential author. The lab technician or core facility scientist who developed a custom experimental workflow for the study should be included as an author. The first-year rotation student who spent several weeks collecting data should be included as an author. The software engineer who made substantial developments to an existing algorithm to analyze the data should be included as an author.

That said, not just any kind of assistance justifies authorship. People who provided routine services or basic technical help, contributed resources (such as by giving plasmids), proofread the manuscript, or gave general advice but did not otherwise significantly contribute to the scientific content of the paper should be thanked in the Acknowledgements. If previously published datasets or software tools are utilized in a new study without further development from their generators, there is no need to name them as authors. Even the person who secured funding need not necessarily be an author on a paper—they too ought to have scientifically contributed in a meaningful way. This is almost unheard of in lab-based science, where a principal investigator typically supervises the design of experiments and analysis of the resulting data, but it’s relatively common practice in, for example, computer science for grad students to publish sole-author papers.

Though different research fields have different traditions, the custom in life sciences research is to name the person or people who did the bulk of the research first, followed by other contributors in descending order of the significance of their contributions, with the principal investigator(s) named at the very end of the list. Disputes often arise over who is named first on a paper. Most journals allow co-first-authorship designations to recognize cases of equal contribution, but one name must necessarily come first; the research community should take care to recognize these equal contributions. Those listed second should not feel that their contributions are minimized in any way.

Project managers should make defining authorship and authorship order a priority of a new study. Students and postdocs, collaborators, and service providers should speak up if authorship is not discussed early on. Setting clear parameters and communicating openly from the outset of a research study—in some cases even by signing formal authorship agreements—can go a long way toward preventing disputes and hurt feelings down the line.

All authors on a paper have a responsibility for at least part of its content. Nature Portfolio journals require author contribution statements, which in our view are crucial to clarify each author’s role and responsibilities, to assign credit where it is due, to discourage the practice of including authors who did not significantly contribute to the study, and to assign accountability in (rare) cases of misconduct. The corresponding author, the main point of contact with a journal, has extra responsibilities. They are tasked with communicating with all coauthors at the submission, revision and final acceptance stages, including ensuring that all are satisfied with the manuscript text and content. The corresponding author must also check that all coauthors agree with changes to the author list, that any competing interests are declared, and that the paper complies with all of the journal’s policies regarding data, materials and code sharing. Note that the journal corresponding author need not be the same person as the corresponding author(s) listed on the published paper, who take responsibility for post-publication inquiries.

We encourage our authors to speak up to let us know when best practices for authorship are not being followed. However, our editorial power is limited to delaying review or publication until disputes can be resolved, making corrections to papers, adding an ‘editorial expression of concern’ or, in very rare cases, retracting a paper. We rely on authors to behave responsibly and we cannot investigate or adjudicate authorship disputes. We advise those embroiled in disputes to seek help from their department head, university or other employer. We also recommend speaking to an experienced neutral party familiar with the study for advice—it’s human nature to often overestimate our own contributions, but it’s right to speak up about unfair treatment.

Unfortunately, we do not have the space to cover all possible authorship scenarios in this short piece. We look forward to answering your questions and perhaps sparking some lively discussion on Twitter, where you can follow us at @naturemethods .

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