deep learning thesis

The Future of AI Research: 20 Thesis Ideas for Undergraduate Students in Machine Learning and Deep Learning for 2023!

A comprehensive guide for crafting an original and innovative thesis in the field of ai..

By Aarafat Islam on 2023-01-11

“The beauty of machine learning is that it can be applied to any problem you want to solve, as long as you can provide the computer with enough examples.” — Andrew Ng

This article provides a list of 20 potential thesis ideas for an undergraduate program in machine learning and deep learning in 2023. Each thesis idea includes an  introduction , which presents a brief overview of the topic and the  research objectives . The ideas provided are related to different areas of machine learning and deep learning, such as computer vision, natural language processing, robotics, finance, drug discovery, and more. The article also includes explanations, examples, and conclusions for each thesis idea, which can help guide the research and provide a clear understanding of the potential contributions and outcomes of the proposed research. The article also emphasized the importance of originality and the need for proper citation in order to avoid plagiarism.

1. Investigating the use of Generative Adversarial Networks (GANs) in medical imaging:  A deep learning approach to improve the accuracy of medical diagnoses.

Introduction:  Medical imaging is an important tool in the diagnosis and treatment of various medical conditions. However, accurately interpreting medical images can be challenging, especially for less experienced doctors. This thesis aims to explore the use of GANs in medical imaging, in order to improve the accuracy of medical diagnoses.

2. Exploring the use of deep learning in natural language generation (NLG): An analysis of the current state-of-the-art and future potential.

Introduction:  Natural language generation is an important field in natural language processing (NLP) that deals with creating human-like text automatically. Deep learning has shown promising results in NLP tasks such as machine translation, sentiment analysis, and question-answering. This thesis aims to explore the use of deep learning in NLG and analyze the current state-of-the-art models, as well as potential future developments.

3. Development and evaluation of deep reinforcement learning (RL) for robotic navigation and control.

Introduction:  Robotic navigation and control are challenging tasks, which require a high degree of intelligence and adaptability. Deep RL has shown promising results in various robotics tasks, such as robotic arm control, autonomous navigation, and manipulation. This thesis aims to develop and evaluate a deep RL-based approach for robotic navigation and control and evaluate its performance in various environments and tasks.

4. Investigating the use of deep learning for drug discovery and development.

Introduction:  Drug discovery and development is a time-consuming and expensive process, which often involves high failure rates. Deep learning has been used to improve various tasks in bioinformatics and biotechnology, such as protein structure prediction and gene expression analysis. This thesis aims to investigate the use of deep learning for drug discovery and development and examine its potential to improve the efficiency and accuracy of the drug development process.

5. Comparison of deep learning and traditional machine learning methods for anomaly detection in time series data.

Introduction:  Anomaly detection in time series data is a challenging task, which is important in various fields such as finance, healthcare, and manufacturing. Deep learning methods have been used to improve anomaly detection in time series data, while traditional machine learning methods have been widely used as well. This thesis aims to compare deep learning and traditional machine learning methods for anomaly detection in time series data and examine their respective strengths and weaknesses.

Photo by  Joanna Kosinska  on  Unsplash

6. Use of deep transfer learning in speech recognition and synthesis.

Introduction:  Speech recognition and synthesis are areas of natural language processing that focus on converting spoken language to text and vice versa. Transfer learning has been widely used in deep learning-based speech recognition and synthesis systems to improve their performance by reusing the features learned from other tasks. This thesis aims to investigate the use of transfer learning in speech recognition and synthesis and how it improves the performance of the system in comparison to traditional methods.

7. The use of deep learning for financial prediction.

Introduction:  Financial prediction is a challenging task that requires a high degree of intelligence and adaptability, especially in the field of stock market prediction. Deep learning has shown promising results in various financial prediction tasks, such as stock price prediction and credit risk analysis. This thesis aims to investigate the use of deep learning for financial prediction and examine its potential to improve the accuracy of financial forecasting.

8. Investigating the use of deep learning for computer vision in agriculture.

Introduction:  Computer vision has the potential to revolutionize the field of agriculture by improving crop monitoring, precision farming, and yield prediction. Deep learning has been used to improve various computer vision tasks, such as object detection, semantic segmentation, and image classification. This thesis aims to investigate the use of deep learning for computer vision in agriculture and examine its potential to improve the efficiency and accuracy of crop monitoring and precision farming.

9. Development and evaluation of deep learning models for generative design in engineering and architecture.

Introduction:  Generative design is a powerful tool in engineering and architecture that can help optimize designs and reduce human error. Deep learning has been used to improve various generative design tasks, such as design optimization and form generation. This thesis aims to develop and evaluate deep learning models for generative design in engineering and architecture and examine their potential to improve the efficiency and accuracy of the design process.

10. Investigating the use of deep learning for natural language understanding.

Introduction:  Natural language understanding is a complex task of natural language processing that involves extracting meaning from text. Deep learning has been used to improve various NLP tasks, such as machine translation, sentiment analysis, and question-answering. This thesis aims to investigate the use of deep learning for natural language understanding and examine its potential to improve the efficiency and accuracy of natural language understanding systems.

Photo by  UX Indonesia  on  Unsplash

11. Comparing deep learning and traditional machine learning methods for image compression.

Introduction:  Image compression is an important task in image processing and computer vision. It enables faster data transmission and storage of image files. Deep learning methods have been used to improve image compression, while traditional machine learning methods have been widely used as well. This thesis aims to compare deep learning and traditional machine learning methods for image compression and examine their respective strengths and weaknesses.

12. Using deep learning for sentiment analysis in social media.

Introduction:  Sentiment analysis in social media is an important task that can help businesses and organizations understand their customers’ opinions and feedback. Deep learning has been used to improve sentiment analysis in social media, by training models on large datasets of social media text. This thesis aims to use deep learning for sentiment analysis in social media, and evaluate its performance against traditional machine learning methods.

13. Investigating the use of deep learning for image generation.

Introduction:  Image generation is a task in computer vision that involves creating new images from scratch or modifying existing images. Deep learning has been used to improve various image generation tasks, such as super-resolution, style transfer, and face generation. This thesis aims to investigate the use of deep learning for image generation and examine its potential to improve the quality and diversity of generated images.

14. Development and evaluation of deep learning models for anomaly detection in cybersecurity.

Introduction:  Anomaly detection in cybersecurity is an important task that can help detect and prevent cyber-attacks. Deep learning has been used to improve various anomaly detection tasks, such as intrusion detection and malware detection. This thesis aims to develop and evaluate deep learning models for anomaly detection in cybersecurity and examine their potential to improve the efficiency and accuracy of cybersecurity systems.

15. Investigating the use of deep learning for natural language summarization.

Introduction:  Natural language summarization is an important task in natural language processing that involves creating a condensed version of a text that preserves its main meaning. Deep learning has been used to improve various natural language summarization tasks, such as document summarization and headline generation. This thesis aims to investigate the use of deep learning for natural language summarization and examine its potential to improve the efficiency and accuracy of natural language summarization systems.

Photo by  Windows  on  Unsplash

16. Development and evaluation of deep learning models for facial expression recognition.

Introduction:  Facial expression recognition is an important task in computer vision and has many practical applications, such as human-computer interaction, emotion recognition, and psychological studies. Deep learning has been used to improve facial expression recognition, by training models on large datasets of images. This thesis aims to develop and evaluate deep learning models for facial expression recognition and examine their performance against traditional machine learning methods.

17. Investigating the use of deep learning for generative models in music and audio.

Introduction:  Music and audio synthesis is an important task in audio processing, which has many practical applications, such as music generation and speech synthesis. Deep learning has been used to improve generative models for music and audio, by training models on large datasets of audio data. This thesis aims to investigate the use of deep learning for generative models in music and audio and examine its potential to improve the quality and diversity of generated audio.

18. Study the comparison of deep learning models with traditional algorithms for anomaly detection in network traffic.

Introduction:  Anomaly detection in network traffic is an important task that can help detect and prevent cyber-attacks. Deep learning models have been used for this task, and traditional methods such as clustering and rule-based systems are widely used as well. This thesis aims to compare deep learning models with traditional algorithms for anomaly detection in network traffic and analyze the trade-offs between the models in terms of accuracy and scalability.

19. Investigating the use of deep learning for improving recommender systems.

Introduction:  Recommender systems are widely used in many applications such as online shopping, music streaming, and movie streaming. Deep learning has been used to improve the performance of recommender systems, by training models on large datasets of user-item interactions. This thesis aims to investigate the use of deep learning for improving recommender systems and compare its performance with traditional content-based and collaborative filtering approaches.

20. Development and evaluation of deep learning models for multi-modal data analysis.

Introduction:  Multi-modal data analysis is the task of analyzing and understanding data from multiple sources such as text, images, and audio. Deep learning has been used to improve multi-modal data analysis, by training models on large datasets of multi-modal data. This thesis aims to develop and evaluate deep learning models for multi-modal data analysis and analyze their potential to improve performance in comparison to single-modal models.

I hope that this article has provided you with a useful guide for your thesis research in machine learning and deep learning. Remember to conduct a thorough literature review and to include proper citations in your work, as well as to be original in your research to avoid plagiarism. I wish you all the best of luck with your thesis and your research endeavors!

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Machine Learning - CMU

PhD Dissertations

[all are .pdf files].

Learning Models that Match Jacob Tyo, 2024

Improving Human Integration across the Machine Learning Pipeline Charvi Rastogi, 2024

Reliable and Practical Machine Learning for Dynamic Healthcare Settings Helen Zhou, 2023

Automatic customization of large-scale spiking network models to neuronal population activity (unavailable) Shenghao Wu, 2023

Estimation of BVk functions from scattered data (unavailable) Addison J. Hu, 2023

Rethinking object categorization in computer vision (unavailable) Jayanth Koushik, 2023

Advances in Statistical Gene Networks Jinjin Tian, 2023 Post-hoc calibration without distributional assumptions Chirag Gupta, 2023

The Role of Noise, Proxies, and Dynamics in Algorithmic Fairness Nil-Jana Akpinar, 2023

Collaborative learning by leveraging siloed data Sebastian Caldas, 2023

Modeling Epidemiological Time Series Aaron Rumack, 2023

Human-Centered Machine Learning: A Statistical and Algorithmic Perspective Leqi Liu, 2023

Uncertainty Quantification under Distribution Shifts Aleksandr Podkopaev, 2023

Probabilistic Reinforcement Learning: Using Data to Define Desired Outcomes, and Inferring How to Get There Benjamin Eysenbach, 2023

Comparing Forecasters and Abstaining Classifiers Yo Joong Choe, 2023

Using Task Driven Methods to Uncover Representations of Human Vision and Semantics Aria Yuan Wang, 2023

Data-driven Decisions - An Anomaly Detection Perspective Shubhranshu Shekhar, 2023

Applied Mathematics of the Future Kin G. Olivares, 2023

METHODS AND APPLICATIONS OF EXPLAINABLE MACHINE LEARNING Joon Sik Kim, 2023

NEURAL REASONING FOR QUESTION ANSWERING Haitian Sun, 2023

Principled Machine Learning for Societally Consequential Decision Making Amanda Coston, 2023

Long term brain dynamics extend cognitive neuroscience to timescales relevant for health and physiology Maxwell B. Wang, 2023

Long term brain dynamics extend cognitive neuroscience to timescales relevant for health and physiology Darby M. Losey, 2023

Calibrated Conditional Density Models and Predictive Inference via Local Diagnostics David Zhao, 2023

Towards an Application-based Pipeline for Explainability Gregory Plumb, 2022

Objective Criteria for Explainable Machine Learning Chih-Kuan Yeh, 2022

Making Scientific Peer Review Scientific Ivan Stelmakh, 2022

Facets of regularization in high-dimensional learning: Cross-validation, risk monotonization, and model complexity Pratik Patil, 2022

Active Robot Perception using Programmable Light Curtains Siddharth Ancha, 2022

Strategies for Black-Box and Multi-Objective Optimization Biswajit Paria, 2022

Unifying State and Policy-Level Explanations for Reinforcement Learning Nicholay Topin, 2022

Sensor Fusion Frameworks for Nowcasting Maria Jahja, 2022

Equilibrium Approaches to Modern Deep Learning Shaojie Bai, 2022

Towards General Natural Language Understanding with Probabilistic Worldbuilding Abulhair Saparov, 2022

Applications of Point Process Modeling to Spiking Neurons (Unavailable) Yu Chen, 2021

Neural variability: structure, sources, control, and data augmentation Akash Umakantha, 2021

Structure and time course of neural population activity during learning Jay Hennig, 2021

Cross-view Learning with Limited Supervision Yao-Hung Hubert Tsai, 2021

Meta Reinforcement Learning through Memory Emilio Parisotto, 2021

Learning Embodied Agents with Scalably-Supervised Reinforcement Learning Lisa Lee, 2021

Learning to Predict and Make Decisions under Distribution Shift Yifan Wu, 2021

Statistical Game Theory Arun Sai Suggala, 2021

Towards Knowledge-capable AI: Agents that See, Speak, Act and Know Kenneth Marino, 2021

Learning and Reasoning with Fast Semidefinite Programming and Mixing Methods Po-Wei Wang, 2021

Bridging Language in Machines with Language in the Brain Mariya Toneva, 2021

Curriculum Learning Otilia Stretcu, 2021

Principles of Learning in Multitask Settings: A Probabilistic Perspective Maruan Al-Shedivat, 2021

Towards Robust and Resilient Machine Learning Adarsh Prasad, 2021

Towards Training AI Agents with All Types of Experiences: A Unified ML Formalism Zhiting Hu, 2021

Building Intelligent Autonomous Navigation Agents Devendra Chaplot, 2021

Learning to See by Moving: Self-supervising 3D Scene Representations for Perception, Control, and Visual Reasoning Hsiao-Yu Fish Tung, 2021

Statistical Astrophysics: From Extrasolar Planets to the Large-scale Structure of the Universe Collin Politsch, 2020

Causal Inference with Complex Data Structures and Non-Standard Effects Kwhangho Kim, 2020

Networks, Point Processes, and Networks of Point Processes Neil Spencer, 2020

Dissecting neural variability using population recordings, network models, and neurofeedback (Unavailable) Ryan Williamson, 2020

Predicting Health and Safety: Essays in Machine Learning for Decision Support in the Public Sector Dylan Fitzpatrick, 2020

Towards a Unified Framework for Learning and Reasoning Han Zhao, 2020

Learning DAGs with Continuous Optimization Xun Zheng, 2020

Machine Learning and Multiagent Preferences Ritesh Noothigattu, 2020

Learning and Decision Making from Diverse Forms of Information Yichong Xu, 2020

Towards Data-Efficient Machine Learning Qizhe Xie, 2020

Change modeling for understanding our world and the counterfactual one(s) William Herlands, 2020

Machine Learning in High-Stakes Settings: Risks and Opportunities Maria De-Arteaga, 2020

Data Decomposition for Constrained Visual Learning Calvin Murdock, 2020

Structured Sparse Regression Methods for Learning from High-Dimensional Genomic Data Micol Marchetti-Bowick, 2020

Towards Efficient Automated Machine Learning Liam Li, 2020

LEARNING COLLECTIONS OF FUNCTIONS Emmanouil Antonios Platanios, 2020

Provable, structured, and efficient methods for robustness of deep networks to adversarial examples Eric Wong , 2020

Reconstructing and Mining Signals: Algorithms and Applications Hyun Ah Song, 2020

Probabilistic Single Cell Lineage Tracing Chieh Lin, 2020

Graphical network modeling of phase coupling in brain activity (unavailable) Josue Orellana, 2019

Strategic Exploration in Reinforcement Learning - New Algorithms and Learning Guarantees Christoph Dann, 2019 Learning Generative Models using Transformations Chun-Liang Li, 2019

Estimating Probability Distributions and their Properties Shashank Singh, 2019

Post-Inference Methods for Scalable Probabilistic Modeling and Sequential Decision Making Willie Neiswanger, 2019

Accelerating Text-as-Data Research in Computational Social Science Dallas Card, 2019

Multi-view Relationships for Analytics and Inference Eric Lei, 2019

Information flow in networks based on nonstationary multivariate neural recordings Natalie Klein, 2019

Competitive Analysis for Machine Learning & Data Science Michael Spece, 2019

The When, Where and Why of Human Memory Retrieval Qiong Zhang, 2019

Towards Effective and Efficient Learning at Scale Adams Wei Yu, 2019

Towards Literate Artificial Intelligence Mrinmaya Sachan, 2019

Learning Gene Networks Underlying Clinical Phenotypes Under SNP Perturbations From Genome-Wide Data Calvin McCarter, 2019

Unified Models for Dynamical Systems Carlton Downey, 2019

Anytime Prediction and Learning for the Balance between Computation and Accuracy Hanzhang Hu, 2019

Statistical and Computational Properties of Some "User-Friendly" Methods for High-Dimensional Estimation Alnur Ali, 2019

Nonparametric Methods with Total Variation Type Regularization Veeranjaneyulu Sadhanala, 2019

New Advances in Sparse Learning, Deep Networks, and Adversarial Learning: Theory and Applications Hongyang Zhang, 2019

Gradient Descent for Non-convex Problems in Modern Machine Learning Simon Shaolei Du, 2019

Selective Data Acquisition in Learning and Decision Making Problems Yining Wang, 2019

Anomaly Detection in Graphs and Time Series: Algorithms and Applications Bryan Hooi, 2019

Neural dynamics and interactions in the human ventral visual pathway Yuanning Li, 2018

Tuning Hyperparameters without Grad Students: Scaling up Bandit Optimisation Kirthevasan Kandasamy, 2018

Teaching Machines to Classify from Natural Language Interactions Shashank Srivastava, 2018

Statistical Inference for Geometric Data Jisu Kim, 2018

Representation Learning @ Scale Manzil Zaheer, 2018

Diversity-promoting and Large-scale Machine Learning for Healthcare Pengtao Xie, 2018

Distribution and Histogram (DIsH) Learning Junier Oliva, 2018

Stress Detection for Keystroke Dynamics Shing-Hon Lau, 2018

Sublinear-Time Learning and Inference for High-Dimensional Models Enxu Yan, 2018

Neural population activity in the visual cortex: Statistical methods and application Benjamin Cowley, 2018

Efficient Methods for Prediction and Control in Partially Observable Environments Ahmed Hefny, 2018

Learning with Staleness Wei Dai, 2018

Statistical Approach for Functionally Validating Transcription Factor Bindings Using Population SNP and Gene Expression Data Jing Xiang, 2017

New Paradigms and Optimality Guarantees in Statistical Learning and Estimation Yu-Xiang Wang, 2017

Dynamic Question Ordering: Obtaining Useful Information While Reducing User Burden Kirstin Early, 2017

New Optimization Methods for Modern Machine Learning Sashank J. Reddi, 2017

Active Search with Complex Actions and Rewards Yifei Ma, 2017

Why Machine Learning Works George D. Montañez , 2017

Source-Space Analyses in MEG/EEG and Applications to Explore Spatio-temporal Neural Dynamics in Human Vision Ying Yang , 2017

Computational Tools for Identification and Analysis of Neuronal Population Activity Pengcheng Zhou, 2016

Expressive Collaborative Music Performance via Machine Learning Gus (Guangyu) Xia, 2016

Supervision Beyond Manual Annotations for Learning Visual Representations Carl Doersch, 2016

Exploring Weakly Labeled Data Across the Noise-Bias Spectrum Robert W. H. Fisher, 2016

Optimizing Optimization: Scalable Convex Programming with Proximal Operators Matt Wytock, 2016

Combining Neural Population Recordings: Theory and Application William Bishop, 2015

Discovering Compact and Informative Structures through Data Partitioning Madalina Fiterau-Brostean, 2015

Machine Learning in Space and Time Seth R. Flaxman, 2015

The Time and Location of Natural Reading Processes in the Brain Leila Wehbe, 2015

Shape-Constrained Estimation in High Dimensions Min Xu, 2015

Spectral Probabilistic Modeling and Applications to Natural Language Processing Ankur Parikh, 2015 Computational and Statistical Advances in Testing and Learning Aaditya Kumar Ramdas, 2015

Corpora and Cognition: The Semantic Composition of Adjectives and Nouns in the Human Brain Alona Fyshe, 2015

Learning Statistical Features of Scene Images Wooyoung Lee, 2014

Towards Scalable Analysis of Images and Videos Bin Zhao, 2014

Statistical Text Analysis for Social Science Brendan T. O'Connor, 2014

Modeling Large Social Networks in Context Qirong Ho, 2014

Semi-Cooperative Learning in Smart Grid Agents Prashant P. Reddy, 2013

On Learning from Collective Data Liang Xiong, 2013

Exploiting Non-sequence Data in Dynamic Model Learning Tzu-Kuo Huang, 2013

Mathematical Theories of Interaction with Oracles Liu Yang, 2013

Short-Sighted Probabilistic Planning Felipe W. Trevizan, 2013

Statistical Models and Algorithms for Studying Hand and Finger Kinematics and their Neural Mechanisms Lucia Castellanos, 2013

Approximation Algorithms and New Models for Clustering and Learning Pranjal Awasthi, 2013

Uncovering Structure in High-Dimensions: Networks and Multi-task Learning Problems Mladen Kolar, 2013

Learning with Sparsity: Structures, Optimization and Applications Xi Chen, 2013

GraphLab: A Distributed Abstraction for Large Scale Machine Learning Yucheng Low, 2013

Graph Structured Normal Means Inference James Sharpnack, 2013 (Joint Statistics & ML PhD)

Probabilistic Models for Collecting, Analyzing, and Modeling Expression Data Hai-Son Phuoc Le, 2013

Learning Large-Scale Conditional Random Fields Joseph K. Bradley, 2013

New Statistical Applications for Differential Privacy Rob Hall, 2013 (Joint Statistics & ML PhD)

Parallel and Distributed Systems for Probabilistic Reasoning Joseph Gonzalez, 2012

Spectral Approaches to Learning Predictive Representations Byron Boots, 2012

Attribute Learning using Joint Human and Machine Computation Edith L. M. Law, 2012

Statistical Methods for Studying Genetic Variation in Populations Suyash Shringarpure, 2012

Data Mining Meets HCI: Making Sense of Large Graphs Duen Horng (Polo) Chau, 2012

Learning with Limited Supervision by Input and Output Coding Yi Zhang, 2012

Target Sequence Clustering Benjamin Shih, 2011

Nonparametric Learning in High Dimensions Han Liu, 2010 (Joint Statistics & ML PhD)

Structural Analysis of Large Networks: Observations and Applications Mary McGlohon, 2010

Modeling Purposeful Adaptive Behavior with the Principle of Maximum Causal Entropy Brian D. Ziebart, 2010

Tractable Algorithms for Proximity Search on Large Graphs Purnamrita Sarkar, 2010

Rare Category Analysis Jingrui He, 2010

Coupled Semi-Supervised Learning Andrew Carlson, 2010

Fast Algorithms for Querying and Mining Large Graphs Hanghang Tong, 2009

Efficient Matrix Models for Relational Learning Ajit Paul Singh, 2009

Exploiting Domain and Task Regularities for Robust Named Entity Recognition Andrew O. Arnold, 2009

Theoretical Foundations of Active Learning Steve Hanneke, 2009

Generalized Learning Factors Analysis: Improving Cognitive Models with Machine Learning Hao Cen, 2009

Detecting Patterns of Anomalies Kaustav Das, 2009

Dynamics of Large Networks Jurij Leskovec, 2008

Computational Methods for Analyzing and Modeling Gene Regulation Dynamics Jason Ernst, 2008

Stacked Graphical Learning Zhenzhen Kou, 2007

Actively Learning Specific Function Properties with Applications to Statistical Inference Brent Bryan, 2007

Approximate Inference, Structure Learning and Feature Estimation in Markov Random Fields Pradeep Ravikumar, 2007

Scalable Graphical Models for Social Networks Anna Goldenberg, 2007

Measure Concentration of Strongly Mixing Processes with Applications Leonid Kontorovich, 2007

Tools for Graph Mining Deepayan Chakrabarti, 2005

Automatic Discovery of Latent Variable Models Ricardo Silva, 2005

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Deep Learning: A Comprehensive Overview on Techniques, Taxonomy, Applications and Research Directions

• Review Article
• Published: 18 August 2021
• Volume 2 , article number  420 , ( 2021 )

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• Iqbal H. Sarker   ORCID: orcid.org/0000-0003-1740-5517 1 , 2  

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Deep learning (DL), a branch of machine learning (ML) and artificial intelligence (AI) is nowadays considered as a core technology of today’s Fourth Industrial Revolution (4IR or Industry 4.0). Due to its learning capabilities from data, DL technology originated from artificial neural network (ANN), has become a hot topic in the context of computing, and is widely applied in various application areas like healthcare, visual recognition, text analytics, cybersecurity, and many more. However, building an appropriate DL model is a challenging task, due to the dynamic nature and variations in real-world problems and data. Moreover, the lack of core understanding turns DL methods into black-box machines that hamper development at the standard level. This article presents a structured and comprehensive view on DL techniques including a taxonomy considering various types of real-world tasks like supervised or unsupervised. In our taxonomy, we take into account deep networks for supervised or discriminative learning , unsupervised or generative learning as well as hybrid learning and relevant others. We also summarize real-world application areas where deep learning techniques can be used. Finally, we point out ten potential aspects for future generation DL modeling with research directions . Overall, this article aims to draw a big picture on DL modeling that can be used as a reference guide for both academia and industry professionals.

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Machine Learning: Algorithms, Real-World Applications and Research Directions

Machine learning and deep learning

Review of deep learning: concepts, CNN architectures, challenges, applications, future directions

Avoid common mistakes on your manuscript.

Introduction

In the late 1980s, neural networks became a prevalent topic in the area of Machine Learning (ML) as well as Artificial Intelligence (AI), due to the invention of various efficient learning methods and network structures [ 52 ]. Multilayer perceptron networks trained by “Backpropagation” type algorithms, self-organizing maps, and radial basis function networks were such innovative methods [ 26 , 36 , 37 ]. While neural networks are successfully used in many applications, the interest in researching this topic decreased later on. After that, in 2006, “Deep Learning” (DL) was introduced by Hinton et al. [ 41 ], which was based on the concept of artificial neural network (ANN). Deep learning became a prominent topic after that, resulting in a rebirth in neural network research, hence, some times referred to as “new-generation neural networks”. This is because deep networks, when properly trained, have produced significant success in a variety of classification and regression challenges [ 52 ].

Nowadays, DL technology is considered as one of the hot topics within the area of machine learning, artificial intelligence as well as data science and analytics, due to its learning capabilities from the given data. Many corporations including Google, Microsoft, Nokia, etc., study it actively as it can provide significant results in different classification and regression problems and datasets [ 52 ]. In terms of working domain, DL is considered as a subset of ML and AI, and thus DL can be seen as an AI function that mimics the human brain’s processing of data. The worldwide popularity of “Deep learning” is increasing day by day, which is shown in our earlier paper [ 96 ] based on the historical data collected from Google trends [ 33 ]. Deep learning differs from standard machine learning in terms of efficiency as the volume of data increases, discussed briefly in Section “ Why Deep Learning in Today's Research and Applications? ”. DL technology uses multiple layers to represent the abstractions of data to build computational models. While deep learning takes a long time to train a model due to a large number of parameters, it takes a short amount of time to run during testing as compared to other machine learning algorithms [ 127 ].

While today’s Fourth Industrial Revolution (4IR or Industry 4.0) is typically focusing on technology-driven “automation, smart and intelligent systems”, DL technology, which is originated from ANN, has become one of the core technologies to achieve the goal [ 103 , 114 ]. A typical neural network is mainly composed of many simple, connected processing elements or processors called neurons, each of which generates a series of real-valued activations for the target outcome. Figure 1 shows a schematic representation of the mathematical model of an artificial neuron, i.e., processing element, highlighting input ( \(X_i\) ), weight ( w ), bias ( b ), summation function ( \(\sum\) ), activation function ( f ) and corresponding output signal ( y ). Neural network-based DL technology is now widely applied in many fields and research areas such as healthcare, sentiment analysis, natural language processing, visual recognition, business intelligence, cybersecurity, and many more that have been summarized in the latter part of this paper.

Schematic representation of the mathematical model of an artificial neuron (processing element), highlighting input ( \(X_i\) ), weight ( w ), bias ( b ), summation function ( \(\sum\) ), activation function ( f ) and output signal ( y )

Although DL models are successfully applied in various application areas, mentioned above, building an appropriate model of deep learning is a challenging task, due to the dynamic nature and variations of real-world problems and data. Moreover, DL models are typically considered as “black-box” machines that hamper the standard development of deep learning research and applications. Thus for clear understanding, in this paper, we present a structured and comprehensive view on DL techniques considering the variations in real-world problems and tasks. To achieve our goal, we briefly discuss various DL techniques and present a taxonomy by taking into account three major categories: (i) deep networks for supervised or discriminative learning that is utilized to provide a discriminative function in supervised deep learning or classification applications; (ii) deep networks for unsupervised or generative learning that are used to characterize the high-order correlation properties or features for pattern analysis or synthesis, thus can be used as preprocessing for the supervised algorithm; and (ii) deep networks for hybrid learning that is an integration of both supervised and unsupervised model and relevant others. We take into account such categories based on the nature and learning capabilities of different DL techniques and how they are used to solve problems in real-world applications [ 97 ]. Moreover, identifying key research issues and prospects including effective data representation, new algorithm design, data-driven hyper-parameter learning, and model optimization, integrating domain knowledge, adapting resource-constrained devices, etc. is one of the key targets of this study, which can lead to “Future Generation DL-Modeling”. Thus the goal of this paper is set to assist those in academia and industry as a reference guide, who want to research and develop data-driven smart and intelligent systems based on DL techniques.

The overall contribution of this paper is summarized as follows:

This article focuses on different aspects of deep learning modeling, i.e., the learning capabilities of DL techniques in different dimensions such as supervised or unsupervised tasks, to function in an automated and intelligent manner, which can play as a core technology of today’s Fourth Industrial Revolution (Industry 4.0).

We explore a variety of prominent DL techniques and present a taxonomy by taking into account the variations in deep learning tasks and how they are used for different purposes. In our taxonomy, we divide the techniques into three major categories such as deep networks for supervised or discriminative learning, unsupervised or generative learning, as well as deep networks for hybrid learning, and relevant others.

We have summarized several potential real-world application areas of deep learning, to assist developers as well as researchers in broadening their perspectives on DL techniques. Different categories of DL techniques highlighted in our taxonomy can be used to solve various issues accordingly.

Finally, we point out and discuss ten potential aspects with research directions for future generation DL modeling in terms of conducting future research and system development.

This paper is organized as follows. Section “ Why Deep Learning in Today's Research and Applications? ” motivates why deep learning is important to build data-driven intelligent systems. In Section“ Deep Learning Techniques and Applications ”, we present our DL taxonomy by taking into account the variations of deep learning tasks and how they are used in solving real-world issues and briefly discuss the techniques with summarizing the potential application areas. In Section “ Research Directions and Future Aspects ”, we discuss various research issues of deep learning-based modeling and highlight the promising topics for future research within the scope of our study. Finally, Section “ Concluding Remarks ” concludes this paper.

Why Deep Learning in Today’s Research and Applications?

The main focus of today’s Fourth Industrial Revolution (Industry 4.0) is typically technology-driven automation, smart and intelligent systems, in various application areas including smart healthcare, business intelligence, smart cities, cybersecurity intelligence, and many more [ 95 ]. Deep learning approaches have grown dramatically in terms of performance in a wide range of applications considering security technologies, particularly, as an excellent solution for uncovering complex architecture in high-dimensional data. Thus, DL techniques can play a key role in building intelligent data-driven systems according to today’s needs, because of their excellent learning capabilities from historical data. Consequently, DL can change the world as well as humans’ everyday life through its automation power and learning from experience. DL technology is therefore relevant to artificial intelligence [ 103 ], machine learning [ 97 ] and data science with advanced analytics [ 95 ] that are well-known areas in computer science, particularly, today’s intelligent computing. In the following, we first discuss regarding the position of deep learning in AI, or how DL technology is related to these areas of computing.

The Position of Deep Learning in AI

Nowadays, artificial intelligence (AI), machine learning (ML), and deep learning (DL) are three popular terms that are sometimes used interchangeably to describe systems or software that behaves intelligently. In Fig. 2 , we illustrate the position of deep Learning, comparing with machine learning and artificial intelligence. According to Fig. 2 , DL is a part of ML as well as a part of the broad area AI. In general, AI incorporates human behavior and intelligence to machines or systems [ 103 ], while ML is the method to learn from data or experience [ 97 ], which automates analytical model building. DL also represents learning methods from data where the computation is done through multi-layer neural networks and processing. The term “Deep” in the deep learning methodology refers to the concept of multiple levels or stages through which data is processed for building a data-driven model.

An illustration of the position of deep learning (DL), comparing with machine learning (ML) and artificial intelligence (AI)

Thus, DL can be considered as one of the core technology of AI, a frontier for artificial intelligence, which can be used for building intelligent systems and automation. More importantly, it pushes AI to a new level, termed “Smarter AI”. As DL are capable of learning from data, there is a strong relation of deep learning with “Data Science” [ 95 ] as well. Typically, data science represents the entire process of finding meaning or insights in data in a particular problem domain, where DL methods can play a key role for advanced analytics and intelligent decision-making [ 104 , 106 ]. Overall, we can conclude that DL technology is capable to change the current world, particularly, in terms of a powerful computational engine and contribute to technology-driven automation, smart and intelligent systems accordingly, and meets the goal of Industry 4.0.

Understanding Various Forms of Data

As DL models learn from data, an in-depth understanding and representation of data are important to build a data-driven intelligent system in a particular application area. In the real world, data can be in various forms, which typically can be represented as below for deep learning modeling:

Sequential Data Sequential data is any kind of data where the order matters, i,e., a set of sequences. It needs to explicitly account for the sequential nature of input data while building the model. Text streams, audio fragments, video clips, time-series data, are some examples of sequential data.

Image or 2D Data A digital image is made up of a matrix, which is a rectangular array of numbers, symbols, or expressions arranged in rows and columns in a 2D array of numbers. Matrix, pixels, voxels, and bit depth are the four essential characteristics or fundamental parameters of a digital image.

Tabular Data A tabular dataset consists primarily of rows and columns. Thus tabular datasets contain data in a columnar format as in a database table. Each column (field) must have a name and each column may only contain data of the defined type. Overall, it is a logical and systematic arrangement of data in the form of rows and columns that are based on data properties or features. Deep learning models can learn efficiently on tabular data and allow us to build data-driven intelligent systems.

The above-discussed data forms are common in the real-world application areas of deep learning. Different categories of DL techniques perform differently depending on the nature and characteristics of data, discussed briefly in Section “ Deep Learning Techniques and Applications ” with a taxonomy presentation. However, in many real-world application areas, the standard machine learning techniques, particularly, logic-rule or tree-based techniques [ 93 , 101 ] perform significantly depending on the application nature. Figure 3 also shows the performance comparison of DL and ML modeling considering the amount of data. In the following, we highlight several cases, where deep learning is useful to solve real-world problems, according to our main focus in this paper.

DL Properties and Dependencies

A DL model typically follows the same processing stages as machine learning modeling. In Fig. 4 , we have shown a deep learning workflow to solve real-world problems, which consists of three processing steps, such as data understanding and preprocessing, DL model building, and training, and validation and interpretation. However, unlike the ML modeling [ 98 , 108 ], feature extraction in the DL model is automated rather than manual. K-nearest neighbor, support vector machines, decision tree, random forest, naive Bayes, linear regression, association rules, k-means clustering, are some examples of machine learning techniques that are commonly used in various application areas [ 97 ]. On the other hand, the DL model includes convolution neural network, recurrent neural network, autoencoder, deep belief network, and many more, discussed briefly with their potential application areas in Section 3 . In the following, we discuss the key properties and dependencies of DL techniques, that are needed to take into account before started working on DL modeling for real-world applications.

An illustration of the performance comparison between deep learning (DL) and other machine learning (ML) algorithms, where DL modeling from large amounts of data can increase the performance

Data Dependencies Deep learning is typically dependent on a large amount of data to build a data-driven model for a particular problem domain. The reason is that when the data volume is small, deep learning algorithms often perform poorly [ 64 ]. In such circumstances, however, the performance of the standard machine-learning algorithms will be improved if the specified rules are used [ 64 , 107 ].

Hardware Dependencies The DL algorithms require large computational operations while training a model with large datasets. As the larger the computations, the more the advantage of a GPU over a CPU, the GPU is mostly used to optimize the operations efficiently. Thus, to work properly with the deep learning training, GPU hardware is necessary. Therefore, DL relies more on high-performance machines with GPUs than standard machine learning methods [ 19 , 127 ].

Feature Engineering Process Feature engineering is the process of extracting features (characteristics, properties, and attributes) from raw data using domain knowledge. A fundamental distinction between DL and other machine-learning techniques is the attempt to extract high-level characteristics directly from data [ 22 , 97 ]. Thus, DL decreases the time and effort required to construct a feature extractor for each problem.

Model Training and Execution time In general, training a deep learning algorithm takes a long time due to a large number of parameters in the DL algorithm; thus, the model training process takes longer. For instance, the DL models can take more than one week to complete a training session, whereas training with ML algorithms takes relatively little time, only seconds to hours [ 107 , 127 ]. During testing, deep learning algorithms take extremely little time to run [ 127 ], when compared to certain machine learning methods.

Black-box Perception and Interpretability Interpretability is an important factor when comparing DL with ML. It’s difficult to explain how a deep learning result was obtained, i.e., “black-box”. On the other hand, the machine-learning algorithms, particularly, rule-based machine learning techniques [ 97 ] provide explicit logic rules (IF-THEN) for making decisions that are easily interpretable for humans. For instance, in our earlier works, we have presented several machines learning rule-based techniques [ 100 , 102 , 105 ], where the extracted rules are human-understandable and easier to interpret, update or delete according to the target applications.

The most significant distinction between deep learning and regular machine learning is how well it performs when data grows exponentially. An illustration of the performance comparison between DL and standard ML algorithms has been shown in Fig. 3 , where DL modeling can increase the performance with the amount of data. Thus, DL modeling is extremely useful when dealing with a large amount of data because of its capacity to process vast amounts of features to build an effective data-driven model. In terms of developing and training DL models, it relies on parallelized matrix and tensor operations as well as computing gradients and optimization. Several, DL libraries and resources [ 30 ] such as PyTorch [ 82 ] (with a high-level API called Lightning) and TensorFlow [ 1 ] (which also offers Keras as a high-level API) offers these core utilities including many pre-trained models, as well as many other necessary functions for implementation and DL model building.

A typical DL workflow to solve real-world problems, which consists of three sequential stages (i) data understanding and preprocessing (ii) DL model building and training (iii) validation and interpretation

Deep Learning Techniques and Applications

In this section, we go through the various types of deep neural network techniques, which typically consider several layers of information-processing stages in hierarchical structures to learn. A typical deep neural network contains multiple hidden layers including input and output layers. Figure 5 shows a general structure of a deep neural network ( \(hidden \; layer=N\) and N \(\ge\) 2) comparing with a shallow network ( \(hidden \; layer=1\) ). We also present our taxonomy on DL techniques based on how they are used to solve various problems, in this section. However, before exploring the details of the DL techniques, it’s useful to review various types of learning tasks such as (i) Supervised: a task-driven approach that uses labeled training data, (ii) Unsupervised: a data-driven process that analyzes unlabeled datasets, (iii) Semi-supervised: a hybridization of both the supervised and unsupervised methods, and (iv) Reinforcement: an environment driven approach, discussed briefly in our earlier paper [ 97 ]. Thus, to present our taxonomy, we divide DL techniques broadly into three major categories: (i) deep networks for supervised or discriminative learning; (ii) deep networks for unsupervised or generative learning; and (ii) deep networks for hybrid learning combing both and relevant others, as shown in Fig. 6 . In the following, we briefly discuss each of these techniques that can be used to solve real-world problems in various application areas according to their learning capabilities.

A general architecture of a a shallow network with one hidden layer and b a deep neural network with multiple hidden layers

A taxonomy of DL techniques, broadly divided into three major categories (i) deep networks for supervised or discriminative learning, (ii) deep networks for unsupervised or generative learning, and (ii) deep networks for hybrid learning and relevant others

Deep Networks for Supervised or Discriminative Learning

This category of DL techniques is utilized to provide a discriminative function in supervised or classification applications. Discriminative deep architectures are typically designed to give discriminative power for pattern classification by describing the posterior distributions of classes conditioned on visible data [ 21 ]. Discriminative architectures mainly include Multi-Layer Perceptron (MLP), Convolutional Neural Networks (CNN or ConvNet), Recurrent Neural Networks (RNN), along with their variants. In the following, we briefly discuss these techniques.

Multi-layer Perceptron (MLP)

Multi-layer Perceptron (MLP), a supervised learning approach [ 83 ], is a type of feedforward artificial neural network (ANN). It is also known as the foundation architecture of deep neural networks (DNN) or deep learning. A typical MLP is a fully connected network that consists of an input layer that receives input data, an output layer that makes a decision or prediction about the input signal, and one or more hidden layers between these two that are considered as the network’s computational engine [ 36 , 103 ]. The output of an MLP network is determined using a variety of activation functions, also known as transfer functions, such as ReLU (Rectified Linear Unit), Tanh, Sigmoid, and Softmax [ 83 , 96 ]. To train MLP employs the most extensively used algorithm “Backpropagation” [ 36 ], a supervised learning technique, which is also known as the most basic building block of a neural network. During the training process, various optimization approaches such as Stochastic Gradient Descent (SGD), Limited Memory BFGS (L-BFGS), and Adaptive Moment Estimation (Adam) are applied. MLP requires tuning of several hyperparameters such as the number of hidden layers, neurons, and iterations, which could make solving a complicated model computationally expensive. However, through partial fit, MLP offers the advantage of learning non-linear models in real-time or online [ 83 ].

Convolutional Neural Network (CNN or ConvNet)

The Convolutional Neural Network (CNN or ConvNet) [ 65 ] is a popular discriminative deep learning architecture that learns directly from the input without the need for human feature extraction. Figure 7 shows an example of a CNN including multiple convolutions and pooling layers. As a result, the CNN enhances the design of traditional ANN like regularized MLP networks. Each layer in CNN takes into account optimum parameters for a meaningful output as well as reduces model complexity. CNN also uses a ‘dropout’ [ 30 ] that can deal with the problem of over-fitting, which may occur in a traditional network.

An example of a convolutional neural network (CNN or ConvNet) including multiple convolution and pooling layers

CNNs are specifically intended to deal with a variety of 2D shapes and are thus widely employed in visual recognition, medical image analysis, image segmentation, natural language processing, and many more [ 65 , 96 ]. The capability of automatically discovering essential features from the input without the need for human intervention makes it more powerful than a traditional network. Several variants of CNN are exist in the area that includes visual geometry group (VGG) [ 38 ], AlexNet [ 62 ], Xception [ 17 ], Inception [ 116 ], ResNet [ 39 ], etc. that can be used in various application domains according to their learning capabilities.

Recurrent Neural Network (RNN) and its Variants

A Recurrent Neural Network (RNN) is another popular neural network, which employs sequential or time-series data and feeds the output from the previous step as input to the current stage [ 27 , 74 ]. Like feedforward and CNN, recurrent networks learn from training input, however, distinguish by their “memory”, which allows them to impact current input and output through using information from previous inputs. Unlike typical DNN, which assumes that inputs and outputs are independent of one another, the output of RNN is reliant on prior elements within the sequence. However, standard recurrent networks have the issue of vanishing gradients, which makes learning long data sequences challenging. In the following, we discuss several popular variants of the recurrent network that minimizes the issues and perform well in many real-world application domains.

Long short-term memory (LSTM) This is a popular form of RNN architecture that uses special units to deal with the vanishing gradient problem, which was introduced by Hochreiter et al. [ 42 ]. A memory cell in an LSTM unit can store data for long periods and the flow of information into and out of the cell is managed by three gates. For instance, the ‘Forget Gate’ determines what information from the previous state cell will be memorized and what information will be removed that is no longer useful, while the ‘Input Gate’ determines which information should enter the cell state and the ‘Output Gate’ determines and controls the outputs. As it solves the issues of training a recurrent network, the LSTM network is considered one of the most successful RNN.

Bidirectional RNN/LSTM Bidirectional RNNs connect two hidden layers that run in opposite directions to a single output, allowing them to accept data from both the past and future. Bidirectional RNNs, unlike traditional recurrent networks, are trained to predict both positive and negative time directions at the same time. A Bidirectional LSTM, often known as a BiLSTM, is an extension of the standard LSTM that can increase model performance on sequence classification issues [ 113 ]. It is a sequence processing model comprising of two LSTMs: one takes the input forward and the other takes it backward. Bidirectional LSTM in particular is a popular choice in natural language processing tasks.

Gated recurrent units (GRUs) A Gated Recurrent Unit (GRU) is another popular variant of the recurrent network that uses gating methods to control and manage information flow between cells in the neural network, introduced by Cho et al. [ 16 ]. The GRU is like an LSTM, however, has fewer parameters, as it has a reset gate and an update gate but lacks the output gate, as shown in Fig. 8 . Thus, the key difference between a GRU and an LSTM is that a GRU has two gates (reset and update gates) whereas an LSTM has three gates (namely input, output and forget gates). The GRU’s structure enables it to capture dependencies from large sequences of data in an adaptive manner, without discarding information from earlier parts of the sequence. Thus GRU is a slightly more streamlined variant that often offers comparable performance and is significantly faster to compute [ 18 ]. Although GRUs have been shown to exhibit better performance on certain smaller and less frequent datasets [ 18 , 34 ], both variants of RNN have proven their effectiveness while producing the outcome.

Basic structure of a gated recurrent unit (GRU) cell consisting of reset and update gates

Overall, the basic property of a recurrent network is that it has at least one feedback connection, which enables activations to loop. This allows the networks to do temporal processing and sequence learning, such as sequence recognition or reproduction, temporal association or prediction, etc. Following are some popular application areas of recurrent networks such as prediction problems, machine translation, natural language processing, text summarization, speech recognition, and many more.

Deep Networks for Generative or Unsupervised Learning

This category of DL techniques is typically used to characterize the high-order correlation properties or features for pattern analysis or synthesis, as well as the joint statistical distributions of the visible data and their associated classes [ 21 ]. The key idea of generative deep architectures is that during the learning process, precise supervisory information such as target class labels is not of concern. As a result, the methods under this category are essentially applied for unsupervised learning as the methods are typically used for feature learning or data generating and representation [ 20 , 21 ]. Thus generative modeling can be used as preprocessing for the supervised learning tasks as well, which ensures the discriminative model accuracy. Commonly used deep neural network techniques for unsupervised or generative learning are Generative Adversarial Network (GAN), Autoencoder (AE), Restricted Boltzmann Machine (RBM), Self-Organizing Map (SOM), and Deep Belief Network (DBN) along with their variants.

Generative Adversarial Network (GAN)

A Generative Adversarial Network (GAN), designed by Ian Goodfellow [ 32 ], is a type of neural network architecture for generative modeling to create new plausible samples on demand. It involves automatically discovering and learning regularities or patterns in input data so that the model may be used to generate or output new examples from the original dataset. As shown in Fig. 9 , GANs are composed of two neural networks, a generator G that creates new data having properties similar to the original data, and a discriminator D that predicts the likelihood of a subsequent sample being drawn from actual data rather than data provided by the generator. Thus in GAN modeling, both the generator and discriminator are trained to compete with each other. While the generator tries to fool and confuse the discriminator by creating more realistic data, the discriminator tries to distinguish the genuine data from the fake data generated by G .

Schematic structure of a standard generative adversarial network (GAN)

Generally, GAN network deployment is designed for unsupervised learning tasks, but it has also proven to be a better solution for semi-supervised and reinforcement learning as well depending on the task [ 3 ]. GANs are also used in state-of-the-art transfer learning research to enforce the alignment of the latent feature space [ 66 ]. Inverse models, such as Bidirectional GAN (BiGAN) [ 25 ] can also learn a mapping from data to the latent space, similar to how the standard GAN model learns a mapping from a latent space to the data distribution. The potential application areas of GAN networks are healthcare, image analysis, data augmentation, video generation, voice generation, pandemics, traffic control, cybersecurity, and many more, which are increasing rapidly. Overall, GANs have established themselves as a comprehensive domain of independent data expansion and as a solution to problems requiring a generative solution.

Auto-Encoder (AE) and Its Variants

An auto-encoder (AE) [ 31 ] is a popular unsupervised learning technique in which neural networks are used to learn representations. Typically, auto-encoders are used to work with high-dimensional data, and dimensionality reduction explains how a set of data is represented. Encoder, code, and decoder are the three parts of an autoencoder. The encoder compresses the input and generates the code, which the decoder subsequently uses to reconstruct the input. The AEs have recently been used to learn generative data models [ 69 ]. The auto-encoder is widely used in many unsupervised learning tasks, e.g., dimensionality reduction, feature extraction, efficient coding, generative modeling, denoising, anomaly or outlier detection, etc. [ 31 , 132 ]. Principal component analysis (PCA) [ 99 ], which is also used to reduce the dimensionality of huge data sets, is essentially similar to a single-layered AE with a linear activation function. Regularized autoencoders such as sparse, denoising, and contractive are useful for learning representations for later classification tasks [ 119 ], while variational autoencoders can be used as generative models [ 56 ], discussed below.

Sparse Autoencoder (SAE) A sparse autoencoder [ 73 ] has a sparsity penalty on the coding layer as a part of its training requirement. SAEs may have more hidden units than inputs, but only a small number of hidden units are permitted to be active at the same time, resulting in a sparse model. Figure 10 shows a schematic structure of a sparse autoencoder with several active units in the hidden layer. This model is thus obliged to respond to the unique statistical features of the training data following its constraints.

Denoising Autoencoder (DAE) A denoising autoencoder is a variant on the basic autoencoder that attempts to improve representation (to extract useful features) by altering the reconstruction criterion, and thus reduces the risk of learning the identity function [ 31 , 119 ]. In other words, it receives a corrupted data point as input and is trained to recover the original undistorted input as its output through minimizing the average reconstruction error over the training data, i.e, cleaning the corrupted input, or denoising. Thus, in the context of computing, DAEs can be considered as very powerful filters that can be utilized for automatic pre-processing. A denoising autoencoder, for example, could be used to automatically pre-process an image, thereby boosting its quality for recognition accuracy.

Contractive Autoencoder (CAE) The idea behind a contractive autoencoder, proposed by Rifai et al. [ 90 ], is to make the autoencoders robust of small changes in the training dataset. In its objective function, a CAE includes an explicit regularizer that forces the model to learn an encoding that is robust to small changes in input values. As a result, the learned representation’s sensitivity to the training input is reduced. While DAEs encourage the robustness of reconstruction as discussed above, CAEs encourage the robustness of representation.

Variational Autoencoder (VAE) A variational autoencoder [ 55 ] has a fundamentally unique property that distinguishes it from the classical autoencoder discussed above, which makes this so effective for generative modeling. VAEs, unlike the traditional autoencoders which map the input onto a latent vector, map the input data into the parameters of a probability distribution, such as the mean and variance of a Gaussian distribution. A VAE assumes that the source data has an underlying probability distribution and then tries to discover the distribution’s parameters. Although this approach was initially designed for unsupervised learning, its use has been demonstrated in other domains such as semi-supervised learning [ 128 ] and supervised learning [ 51 ].

Schematic structure of a sparse autoencoder (SAE) with several active units (filled circle) in the hidden layer

Although, the earlier concept of AE was typically for dimensionality reduction or feature learning mentioned above, recently, AEs have been brought to the forefront of generative modeling, even the generative adversarial network is one of the popular methods in the area. The AEs have been effectively employed in a variety of domains, including healthcare, computer vision, speech recognition, cybersecurity, natural language processing, and many more. Overall, we can conclude that auto-encoder and its variants can play a significant role as unsupervised feature learning with neural network architecture.

Kohonen Map or Self-Organizing Map (SOM)

A Self-Organizing Map (SOM) or Kohonen Map [ 59 ] is another form of unsupervised learning technique for creating a low-dimensional (usually two-dimensional) representation of a higher-dimensional data set while maintaining the topological structure of the data. SOM is also known as a neural network-based dimensionality reduction algorithm that is commonly used for clustering [ 118 ]. A SOM adapts to the topological form of a dataset by repeatedly moving its neurons closer to the data points, allowing us to visualize enormous datasets and find probable clusters. The first layer of a SOM is the input layer, and the second layer is the output layer or feature map. Unlike other neural networks that use error-correction learning, such as backpropagation with gradient descent [ 36 ], SOMs employ competitive learning, which uses a neighborhood function to retain the input space’s topological features. SOM is widely utilized in a variety of applications, including pattern identification, health or medical diagnosis, anomaly detection, and virus or worm attack detection [ 60 , 87 ]. The primary benefit of employing a SOM is that this can make high-dimensional data easier to visualize and analyze to understand the patterns. The reduction of dimensionality and grid clustering makes it easy to observe similarities in the data. As a result, SOMs can play a vital role in developing a data-driven effective model for a particular problem domain, depending on the data characteristics.

Restricted Boltzmann Machine (RBM)

A Restricted Boltzmann Machine (RBM) [ 75 ] is also a generative stochastic neural network capable of learning a probability distribution across its inputs. Boltzmann machines typically consist of visible and hidden nodes and each node is connected to every other node, which helps us understand irregularities by learning how the system works in normal circumstances. RBMs are a subset of Boltzmann machines that have a limit on the number of connections between the visible and hidden layers [ 77 ]. This restriction permits training algorithms like the gradient-based contrastive divergence algorithm to be more efficient than those for Boltzmann machines in general [ 41 ]. RBMs have found applications in dimensionality reduction, classification, regression, collaborative filtering, feature learning, topic modeling, and many others. In the area of deep learning modeling, they can be trained either supervised or unsupervised, depending on the task. Overall, the RBMs can recognize patterns in data automatically and develop probabilistic or stochastic models, which are utilized for feature selection or extraction, as well as forming a deep belief network.

Deep Belief Network (DBN)

A Deep Belief Network (DBN) [ 40 ] is a multi-layer generative graphical model of stacking several individual unsupervised networks such as AEs or RBMs, that use each network’s hidden layer as the input for the next layer, i.e, connected sequentially. Thus, we can divide a DBN into (i) AE-DBN which is known as stacked AE, and (ii) RBM-DBN that is known as stacked RBM, where AE-DBN is composed of autoencoders and RBM-DBN is composed of restricted Boltzmann machines, discussed earlier. The ultimate goal is to develop a faster-unsupervised training technique for each sub-network that depends on contrastive divergence [ 41 ]. DBN can capture a hierarchical representation of input data based on its deep structure. The primary idea behind DBN is to train unsupervised feed-forward neural networks with unlabeled data before fine-tuning the network with labeled input. One of the most important advantages of DBN, as opposed to typical shallow learning networks, is that it permits the detection of deep patterns, which allows for reasoning abilities and the capture of the deep difference between normal and erroneous data [ 89 ]. A continuous DBN is simply an extension of a standard DBN that allows a continuous range of decimals instead of binary data. Overall, the DBN model can play a key role in a wide range of high-dimensional data applications due to its strong feature extraction and classification capabilities and become one of the significant topics in the field of neural networks.

In summary, the generative learning techniques discussed above typically allow us to generate a new representation of data through exploratory analysis. As a result, these deep generative networks can be utilized as preprocessing for supervised or discriminative learning tasks, as well as ensuring model accuracy, where unsupervised representation learning can allow for improved classifier generalization.

Deep Networks for Hybrid Learning and Other Approaches

In addition to the above-discussed deep learning categories, hybrid deep networks and several other approaches such as deep transfer learning (DTL) and deep reinforcement learning (DRL) are popular, which are discussed in the following.

Hybrid Deep Neural Networks

Generative models are adaptable, with the capacity to learn from both labeled and unlabeled data. Discriminative models, on the other hand, are unable to learn from unlabeled data yet outperform their generative counterparts in supervised tasks. A framework for training both deep generative and discriminative models simultaneously can enjoy the benefits of both models, which motivates hybrid networks.

Hybrid deep learning models are typically composed of multiple (two or more) deep basic learning models, where the basic model is a discriminative or generative deep learning model discussed earlier. Based on the integration of different basic generative or discriminative models, the below three categories of hybrid deep learning models might be useful for solving real-world problems. These are as follows:

Hybrid \(Model\_1\) : An integration of different generative or discriminative models to extract more meaningful and robust features. Examples could be CNN+LSTM, AE+GAN, and so on.

Hybrid \(Model\_2\) : An integration of generative model followed by a discriminative model. Examples could be DBN+MLP, GAN+CNN, AE+CNN, and so on.

Hybrid \(Model\_3\) : An integration of generative or discriminative model followed by a non-deep learning classifier. Examples could be AE+SVM, CNN+SVM, and so on.

Thus, in a broad sense, we can conclude that hybrid models can be either classification-focused or non-classification depending on the target use. However, most of the hybrid learning-related studies in the area of deep learning are classification-focused or supervised learning tasks, summarized in Table 1 . The unsupervised generative models with meaningful representations are employed to enhance the discriminative models. The generative models with useful representation can provide more informative and low-dimensional features for discrimination, and they can also enable to enhance the training data quality and quantity, providing additional information for classification.

Deep Transfer Learning (DTL)

Transfer Learning is a technique for effectively using previously learned model knowledge to solve a new task with minimum training or fine-tuning. In comparison to typical machine learning techniques [ 97 ], DL takes a large amount of training data. As a result, the need for a substantial volume of labeled data is a significant barrier to address some essential domain-specific tasks, particularly, in the medical sector, where creating large-scale, high-quality annotated medical or health datasets is both difficult and costly. Furthermore, the standard DL model demands a lot of computational resources, such as a GPU-enabled server, even though researchers are working hard to improve it. As a result, Deep Transfer Learning (DTL), a DL-based transfer learning method, might be helpful to address this issue. Figure 11 shows a general structure of the transfer learning process, where knowledge from the pre-trained model is transferred into a new DL model. It’s especially popular in deep learning right now since it allows to train deep neural networks with very little data [ 126 ].

A general structure of transfer learning process, where knowledge from pre-trained model is transferred into new DL model

Transfer learning is a two-stage approach for training a DL model that consists of a pre-training step and a fine-tuning step in which the model is trained on the target task. Since deep neural networks have gained popularity in a variety of fields, a large number of DTL methods have been presented, making it crucial to categorize and summarize them. Based on the techniques used in the literature, DTL can be classified into four categories [ 117 ]. These are (i) instances-based deep transfer learning that utilizes instances in source domain by appropriate weight, (ii) mapping-based deep transfer learning that maps instances from two domains into a new data space with better similarity, (iii) network-based deep transfer learning that reuses the partial of network pre-trained in the source domain, and (iv) adversarial based deep transfer learning that uses adversarial technology to find transferable features that both suitable for two domains. Due to its high effectiveness and practicality, adversarial-based deep transfer learning has exploded in popularity in recent years. Transfer learning can also be classified into inductive, transductive, and unsupervised transfer learning depending on the circumstances between the source and target domains and activities [ 81 ]. While most current research focuses on supervised learning, how deep neural networks can transfer knowledge in unsupervised or semi-supervised learning may gain further interest in the future. DTL techniques are useful in a variety of fields including natural language processing, sentiment classification, visual recognition, speech recognition, spam filtering, and relevant others.

Deep Reinforcement Learning (DRL)

Reinforcement learning takes a different approach to solving the sequential decision-making problem than other approaches we have discussed so far. The concepts of an environment and an agent are often introduced first in reinforcement learning. The agent can perform a series of actions in the environment, each of which has an impact on the environment’s state and can result in possible rewards (feedback) - “positive” for good sequences of actions that result in a “good” state, and “negative” for bad sequences of actions that result in a “bad” state. The purpose of reinforcement learning is to learn good action sequences through interaction with the environment, typically referred to as a policy.

Schematic structure of deep reinforcement learning (DRL) highlighting a deep neural network

Deep reinforcement learning (DRL or deep RL) [ 9 ] integrates neural networks with a reinforcement learning architecture to allow the agents to learn the appropriate actions in a virtual environment, as shown in Fig. 12 . In the area of reinforcement learning, model-based RL is based on learning a transition model that enables for modeling of the environment without interacting with it directly, whereas model-free RL methods learn directly from interactions with the environment. Q-learning is a popular model-free RL technique for determining the best action-selection policy for any (finite) Markov Decision Process (MDP) [ 86 , 97 ]. MDP is a mathematical framework for modeling decisions based on state, action, and rewards [ 86 ]. In addition, Deep Q-Networks, Double DQN, Bi-directional Learning, Monte Carlo Control, etc. are used in the area [ 50 , 97 ]. In DRL methods it incorporates DL models, e.g. Deep Neural Networks (DNN), based on MDP principle [ 71 ], as policy and/or value function approximators. CNN for example can be used as a component of RL agents to learn directly from raw, high-dimensional visual inputs. In the real world, DRL-based solutions can be used in several application areas including robotics, video games, natural language processing, computer vision, and relevant others.

Several potential real-world application areas of deep learning

Deep Learning Application Summary

During the past few years, deep learning has been successfully applied to numerous problems in many application areas. These include natural language processing, sentiment analysis, cybersecurity, business, virtual assistants, visual recognition, healthcare, robotics, and many more. In Fig. 13 , we have summarized several potential real-world application areas of deep learning. Various deep learning techniques according to our presented taxonomy in Fig. 6 that includes discriminative learning, generative learning, as well as hybrid models, discussed earlier, are employed in these application areas. In Table 1 , we have also summarized various deep learning tasks and techniques that are used to solve the relevant tasks in several real-world applications areas. Overall, from Fig. 13 and Table 1 , we can conclude that the future prospects of deep learning modeling in real-world application areas are huge and there are lots of scopes to work. In the next section, we also summarize the research issues in deep learning modeling and point out the potential aspects for future generation DL modeling.

Research Directions and Future Aspects

While existing methods have established a solid foundation for deep learning systems and research, this section outlines the below ten potential future research directions based on our study.

Automation in Data Annotation According to the existing literature, discussed in Section 3 , most of the deep learning models are trained through publicly available datasets that are annotated. However, to build a system for a new problem domain or recent data-driven system, raw data from relevant sources are needed to collect. Thus, data annotation, e.g., categorization, tagging, or labeling of a large amount of raw data, is important for building discriminative deep learning models or supervised tasks, which is challenging. A technique with the capability of automatic and dynamic data annotation, rather than manual annotation or hiring annotators, particularly, for large datasets, could be more effective for supervised learning as well as minimizing human effort. Therefore, a more in-depth investigation of data collection and annotation methods, or designing an unsupervised learning-based solution could be one of the primary research directions in the area of deep learning modeling.

Data Preparation for Ensuring Data Quality As discussed earlier throughout the paper, the deep learning algorithms highly impact data quality, and availability for training, and consequently on the resultant model for a particular problem domain. Thus, deep learning models may become worthless or yield decreased accuracy if the data is bad, such as data sparsity, non-representative, poor-quality, ambiguous values, noise, data imbalance, irrelevant features, data inconsistency, insufficient quantity, and so on for training. Consequently, such issues in data can lead to poor processing and inaccurate findings, which is a major problem while discovering insights from data. Thus deep learning models also need to adapt to such rising issues in data, to capture approximated information from observations. Therefore, effective data pre-processing techniques are needed to design according to the nature of the data problem and characteristics, to handling such emerging challenges, which could be another research direction in the area.

Black-box Perception and Proper DL/ML Algorithm Selection In general, it’s difficult to explain how a deep learning result is obtained or how they get the ultimate decisions for a particular model. Although DL models achieve significant performance while learning from large datasets, as discussed in Section 2 , this “black-box” perception of DL modeling typically represents weak statistical interpretability that could be a major issue in the area. On the other hand, ML algorithms, particularly, rule-based machine learning techniques provide explicit logic rules (IF-THEN) for making decisions that are easier to interpret, update or delete according to the target applications [ 97 , 100 , 105 ]. If the wrong learning algorithm is chosen, unanticipated results may occur, resulting in a loss of effort as well as the model’s efficacy and accuracy. Thus by taking into account the performance, complexity, model accuracy, and applicability, selecting an appropriate model for the target application is challenging, and in-depth analysis is needed for better understanding and decision making.

Deep Networks for Supervised or Discriminative Learning: According to our designed taxonomy of deep learning techniques, as shown in Fig. 6 , discriminative architectures mainly include MLP, CNN, and RNN, along with their variants that are applied widely in various application domains. However, designing new techniques or their variants of such discriminative techniques by taking into account model optimization, accuracy, and applicability, according to the target real-world application and the nature of the data, could be a novel contribution, which can also be considered as a major future aspect in the area of supervised or discriminative learning.

Deep Networks for Unsupervised or Generative Learning As discussed in Section 3 , unsupervised learning or generative deep learning modeling is one of the major tasks in the area, as it allows us to characterize the high-order correlation properties or features in data, or generating a new representation of data through exploratory analysis. Moreover, unlike supervised learning [ 97 ], it does not require labeled data due to its capability to derive insights directly from the data as well as data-driven decision making. Consequently, it thus can be used as preprocessing for supervised learning or discriminative modeling as well as semi-supervised learning tasks, which ensure learning accuracy and model efficiency. According to our designed taxonomy of deep learning techniques, as shown in Fig. 6 , generative techniques mainly include GAN, AE, SOM, RBM, DBN, and their variants. Thus, designing new techniques or their variants for an effective data modeling or representation according to the target real-world application could be a novel contribution, which can also be considered as a major future aspect in the area of unsupervised or generative learning.

Hybrid/Ensemble Modeling and Uncertainty Handling According to our designed taxonomy of DL techniques, as shown in Fig 6 , this is considered as another major category in deep learning tasks. As hybrid modeling enjoys the benefits of both generative and discriminative learning, an effective hybridization can outperform others in terms of performance as well as uncertainty handling in high-risk applications. In Section 3 , we have summarized various types of hybridization, e.g., AE+CNN/SVM. Since a group of neural networks is trained with distinct parameters or with separate sub-sampling training datasets, hybridization or ensembles of such techniques, i.e., DL with DL/ML, can play a key role in the area. Thus designing effective blended discriminative and generative models accordingly rather than naive method, could be an important research opportunity to solve various real-world issues including semi-supervised learning tasks and model uncertainty.

Dynamism in Selecting Threshold/ Hyper-parameters Values, and Network Structures with Computational Efficiency In general, the relationship among performance, model complexity, and computational requirements is a key issue in deep learning modeling and applications. A combination of algorithmic advancements with improved accuracy as well as maintaining computational efficiency, i.e., achieving the maximum throughput while consuming the least amount of resources, without significant information loss, can lead to a breakthrough in the effectiveness of deep learning modeling in future real-world applications. The concept of incremental approaches or recency-based learning [ 100 ] might be effective in several cases depending on the nature of target applications. Moreover, assuming the network structures with a static number of nodes and layers, hyper-parameters values or threshold settings, or selecting them by the trial-and-error process may not be effective in many cases, as it can be changed due to the changes in data. Thus, a data-driven approach to select them dynamically could be more effective while building a deep learning model in terms of both performance and real-world applicability. Such type of data-driven automation can lead to future generation deep learning modeling with additional intelligence, which could be a significant future aspect in the area as well as an important research direction to contribute.

Lightweight Deep Learning Modeling for Next-Generation Smart Devices and Applications: In recent years, the Internet of Things (IoT) consisting of billions of intelligent and communicating things and mobile communications technologies have become popular to detect and gather human and environmental information (e.g. geo-information, weather data, bio-data, human behaviors, and so on) for a variety of intelligent services and applications. Every day, these ubiquitous smart things or devices generate large amounts of data, requiring rapid data processing on a variety of smart mobile devices [ 72 ]. Deep learning technologies can be incorporate to discover underlying properties and to effectively handle such large amounts of sensor data for a variety of IoT applications including health monitoring and disease analysis, smart cities, traffic flow prediction, and monitoring, smart transportation, manufacture inspection, fault assessment, smart industry or Industry 4.0, and many more. Although deep learning techniques discussed in Section 3 are considered as powerful tools for processing big data, lightweight modeling is important for resource-constrained devices, due to their high computational cost and considerable memory overhead. Thus several techniques such as optimization, simplification, compression, pruning, generalization, important feature extraction, etc. might be helpful in several cases. Therefore, constructing the lightweight deep learning techniques based on a baseline network architecture to adapt the DL model for next-generation mobile, IoT, or resource-constrained devices and applications, could be considered as a significant future aspect in the area.

Incorporating Domain Knowledge into Deep Learning Modeling Domain knowledge, as opposed to general knowledge or domain-independent knowledge, is knowledge of a specific, specialized topic or field. For instance, in terms of natural language processing, the properties of the English language typically differ from other languages like Bengali, Arabic, French, etc. Thus integrating domain-based constraints into the deep learning model could produce better results for such particular purpose. For instance, a task-specific feature extractor considering domain knowledge in smart manufacturing for fault diagnosis can resolve the issues in traditional deep-learning-based methods [ 28 ]. Similarly, domain knowledge in medical image analysis [ 58 ], financial sentiment analysis [ 49 ], cybersecurity analytics [ 94 , 103 ] as well as conceptual data model in which semantic information, (i.e., meaningful for a system, rather than merely correlational) [ 45 , 121 , 131 ] is included, can play a vital role in the area. Transfer learning could be an effective way to get started on a new challenge with domain knowledge. Moreover, contextual information such as spatial, temporal, social, environmental contexts [ 92 , 104 , 108 ] can also play an important role to incorporate context-aware computing with domain knowledge for smart decision making as well as building adaptive and intelligent context-aware systems. Therefore understanding domain knowledge and effectively incorporating them into the deep learning model could be another research direction.

Designing General Deep Learning Framework for Target Application Domains One promising research direction for deep learning-based solutions is to develop a general framework that can handle data diversity, dimensions, stimulation types, etc. The general framework would require two key capabilities: the attention mechanism that focuses on the most valuable parts of input signals, and the ability to capture latent feature that enables the framework to capture the distinctive and informative features. Attention models have been a popular research topic because of their intuition, versatility, and interpretability, and employed in various application areas like computer vision, natural language processing, text or image classification, sentiment analysis, recommender systems, user profiling, etc [ 13 , 80 ]. Attention mechanism can be implemented based on learning algorithms such as reinforcement learning that is capable of finding the most useful part through a policy search [ 133 , 134 ]. Similarly, CNN can be integrated with suitable attention mechanisms to form a general classification framework, where CNN can be used as a feature learning tool for capturing features in various levels and ranges. Thus, designing a general deep learning framework considering attention as well as a latent feature for target application domains could be another area to contribute.

To summarize, deep learning is a fairly open topic to which academics can contribute by developing new methods or improving existing methods to handle the above-mentioned concerns and tackle real-world problems in a variety of application areas. This can also help the researchers conduct a thorough analysis of the application’s hidden and unexpected challenges to produce more reliable and realistic outcomes. Overall, we can conclude that addressing the above-mentioned issues and contributing to proposing effective and efficient techniques could lead to “Future Generation DL” modeling as well as more intelligent and automated applications.

Concluding Remarks

In this article, we have presented a structured and comprehensive view of deep learning technology, which is considered a core part of artificial intelligence as well as data science. It starts with a history of artificial neural networks and moves to recent deep learning techniques and breakthroughs in different applications. Then, the key algorithms in this area, as well as deep neural network modeling in various dimensions are explored. For this, we have also presented a taxonomy considering the variations of deep learning tasks and how they are used for different purposes. In our comprehensive study, we have taken into account not only the deep networks for supervised or discriminative learning but also the deep networks for unsupervised or generative learning, and hybrid learning that can be used to solve a variety of real-world issues according to the nature of problems.

Deep learning, unlike traditional machine learning and data mining algorithms, can produce extremely high-level data representations from enormous amounts of raw data. As a result, it has provided an excellent solution to a variety of real-world problems. A successful deep learning technique must possess the relevant data-driven modeling depending on the characteristics of raw data. The sophisticated learning algorithms then need to be trained through the collected data and knowledge related to the target application before the system can assist with intelligent decision-making. Deep learning has shown to be useful in a wide range of applications and research areas such as healthcare, sentiment analysis, visual recognition, business intelligence, cybersecurity, and many more that are summarized in the paper.

Finally, we have summarized and discussed the challenges faced and the potential research directions, and future aspects in the area. Although deep learning is considered a black-box solution for many applications due to its poor reasoning and interpretability, addressing the challenges or future aspects that are identified could lead to future generation deep learning modeling and smarter systems. This can also help the researchers for in-depth analysis to produce more reliable and realistic outcomes. Overall, we believe that our study on neural networks and deep learning-based advanced analytics points in a promising path and can be utilized as a reference guide for future research and implementations in relevant application domains by both academic and industry professionals.

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Iqbal H. Sarker

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This article is part of the topical collection “Advances in Computational Approaches for Artificial Intelligence, Image Processing, IoT and Cloud Applications” guest edited by Bhanu Prakash K. N. and M. Shivakumar.

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Sarker, I.H. Deep Learning: A Comprehensive Overview on Techniques, Taxonomy, Applications and Research Directions. SN COMPUT. SCI. 2 , 420 (2021). https://doi.org/10.1007/s42979-021-00815-1

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Received : 29 May 2021

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Published : 18 August 2021

DOI : https://doi.org/10.1007/s42979-021-00815-1

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Deep Learning for Ordinary Differential Equations and Predictive Uncertainty

Deep neural networks (DNNs) have demonstrated outstanding performance in numerous tasks such as image recognition and natural language processing. However, in dynamic systems modeling, the tasks of estimating and uncovering the potentially nonlinear structure of systems represented by ordinary differential equations (ODEs) pose a significant challenge. In this dissertation, we employ DNNs to enable precise and efficient parameter estimation of dynamic systems. In addition, we introduce a highly flexible neural ODE model to capture both nonlinear and sparse dependent relations among multiple functional processes. Nonetheless, DNNs are susceptible to overfitting and often struggle to accurately assess predictive uncertainty despite their widespread success across various AI domains. The challenge of defining meaningful priors for DNN weights and characterizing predictive uncertainty persists. In this dissertation, we present a novel neural adaptive empirical Bayes framework with a new class of prior distributions to address weight uncertainty.

In the first part, we propose a precise and efficient approach utilizing DNNs for estimation and inference of ODEs given noisy data. The DNNs are employed directly as a nonparametric proxy for the true solution of the ODEs, eliminating the need for numerical integration and resulting in significant computational time savings. We develop a gradient descent algorithm to estimate both the DNNs solution and the parameters of the ODEs by optimizing a fidelity-penalized likelihood loss function. This ensures that the derivatives of the DNNs estimator conform to the system of ODEs. Our method is particularly effective in scenarios where only a set of variables transformed from the system components by a given function are observed. We establish the convergence rate of the DNNs estimator and demonstrate that the derivatives of the DNNs solution asymptotically satisfy the ODEs determined by the inferred parameters. Simulations and real data analysis of COVID-19 daily cases are conducted to show the superior performance of our method in terms of accuracy of parameter estimates and system recovery, and computational speed.

In the second part, we present a novel sparse neural ODE model to characterize flexible relations among multiple functional processes. This model represents the latent states of the functions using a set of ODEs and models the dynamic changes of these states utilizing a DNN with a specially designed architecture and sparsity-inducing regularization. Our new model is able to capture both nonlinear and sparse dependent relations among multivariate functions. We develop an efficient optimization algorithm to estimate the unknown weights for the DNN under the sparsity constraint. Furthermore, we establish both algorithmic convergence and selection consistency, providing theoretical guarantees for the proposed method. We illustrate the efficacy of the method through simulation studies and a gene regulatory network example.

In the third part, we introduce a class of implicit generative priors to facilitate Bayesian modeling and inference. These priors are derived through a nonlinear transformation of a known low-dimensional distribution, allowing us to handle complex data distributions and capture the underlying manifold structure effectively. Our framework combines variational inference with a gradient ascent algorithm, which serves to select the hyperparameters and approximate the posterior distribution. Theoretical justification is established through both the posterior and classification consistency. We demonstrate the practical applications of our framework through extensive simulation examples and real-world datasets. Our experimental results highlight the superiority of our proposed framework over existing methods, such as sparse variational Bayesian and generative models, in terms of prediction accuracy and uncertainty quantification.

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Talking us into the Metaverse: Towards Realistic Streaming Speech-to-Face Animation

 Speech-to-face animation aims to create a realistic visual representation of a person’s face based on their voice. Developing realistic facial animations of a person from a speech signal pertains to the main challenges of accurately capturing and reproducing the face’s complex motions, including the tongue’s motion. In this work, we use a combination of speech-pathology study techniques and machine learning to analyze a person’s speech patterns and map them onto a digital avatar. The ultimate objective of our research is to animate realistic avatars in real time. To achieve this goal, we introduce a large-scale dataset that comprises 2.55 hours of corresponding speech and motion data captured from the tongue, lips, and jaw using electromagnetic articulography, while the facial motion was captured through stereo video. As an initial step, we make an exploratory analysis of different deep-learning-based methods for accurate and generalizable speech-to-tongue animation. We evaluate several encoder-decoder network architectures and audio features ranging from traditional to self-supervised audio representations. The best model achieves a temporal mean error of 1.77 𝑚𝑚 when predicting the tongue, lips, and jaw motion and delivers realistic animations on singing audio regardless of training the model only using neutral speech from a single actor. Although adept at tongue movement predictions, this approach was limited in facial animations, prompting the evolution towards the IMFT’23 dataset that captures intricate facial motion pairing 2.28 hours of audio, video, and facial, lips, jaw, and tongue 3D landmarks. Our proposed Phonetically Informed Speech-Animation Network (PhISANet), results in animations with a sub-millimeter mean vertex error. It does this by incorporating WavLM feature encodings and by pioneering the use of a Connectionist Temporal Classifier (CTC) through Multi-task Learning in the speech-to-animation field of study. PhISANet generalizes across voices from different ages, genders, and languages. Perception user studies confirm that a CTC offers superior animation accuracy and realism and perceptible improvements in tongue and lip animations. Furthermore, to ensure animation quality, we advocate using visual speech recognition networks, specifically the AV-HuBERT model, as a benchmark. This research pushes the boundaries of realistic speech-to-animation, emphasizing the promise of real-time applications and setting a precedent in the speech-to-animation field of study 

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MEMP PhD Thesis Defense (12:00pm): Christian Landeros

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Machine-Guided Biopsy Analysis in Oncology: Facilitating Diagnostic Access and Biomedical Discovery Through Deep Learning

Oncology researchers have long understood the critical role of disease heterogeneity in shaping patient outcomes and treatment responses. Patient datasets now encompass a wide range of imaging, molecular, and genetic information in an effort to provide more personalized and targeted care. In this thesis, we outline three case studies examining the role deep learning can play in interpreting and utilizing complex biomedical data. In the first case, we employ neural networks to replace computationally intensive image processing steps in a point-of-care HPV diagnostic device, facilitating its deployment to resource-limited settings. In the second, we develop a comprehensive computational pipeline for cyclic fluorescent microscopy. We identify key immune cell subpopulations in head and neck cancer biopsies to better understand the tumor microenvironment’s influence on disease progression and treatment response. Our third study tackles the analysis of much larger gigapixel-sized digital histology images from breast cancer biopsies. We establish a two-step approach that i) uses self-supervised learning to encode small-scale histological details into robust representations and ii) applies a transformer model to these representations to evaluate larger-scale histological patterns. Our model successfully distinguished patients with high-risk genetic profiles from histology alone and provided visualization tools to highlight slide regions most closely associated with a high risk of cancer recurrence. In doing so, we set the stage for deep learning to serve as an alternative to expensive genetic testing as well as a tool for illuminating previously unidentified markers of recurrence risk. These studies underscore deep learning’s versatility in oncology, streamlining the integration of complex datasets into clinical workflows and broadening access to state-of-the-art personalized care.

Thesis Supervisor: Hakho Lee, PhD Professor of Radiology, HMS; Director of the Biomedical Engineering Program at the Center for Systems Biology, MGH

Thesis Committee Chair: Collin M. Stultz, MD, PhD Nina T. and Robert H. Rubin Professor, Electrical Engineering & Computer Science and Institute for Medical Engineering & Science; Co-Director, Harvard-MIT Health Sciences & Technology; Associate Director, Institute for Medical Engineering and Science, MIT

Thesis Reader: Amy Ly, MD Associate Professor of Pathology, HMS; Assistant Pathologist, MGH

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MSc Thesis Defense by: Achini Herath

The school of computer science is pleased to present…, multimodal contrastive clustering: deep unsupervised learning approach for cancer subtype discovery with multi-omics data​, date: tuesday, 23 apr 2024, time: 2:00 pm, location: essex hall, room 122.